Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100996681 Gene

Subcategory (RNA class) for LOC100996681 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100996681 Gene

  • Uncharacterized LOC100996681 3
  • CTD-2329C7.2 3

External Ids for LOC100996681 Gene

Previous GeneCards Identifiers for LOC100996681 Gene

  • GC19P034046

Summaries for LOC100996681 Gene

GeneCards Summary for LOC100996681 Gene

LOC100996681 (Uncharacterized LOC100996681) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100996681 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996681 Gene

Genomics for LOC100996681 Gene

GeneHancer (GH) Regulatory Elements for LOC100996681 Gene

Promoters and enhancers for LOC100996681 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J033543 Enhancer 0.6 ENCODE 0.4 -9.7 -9663 0.2 KLF14 ATF7 SP2 ATF2 ZBTB17 ZFHX2 CTCF ZBTB6 EGR2 LOC100996681 LOC105372370
GH19J033532 Enhancer 0.5 Ensembl ENCODE 0.4 -19.8 -19812 1.4 POLR2A PEPD LOC105372370 LOC100996681
GH19J033529 Enhancer 0.5 Ensembl 0.3 -23.5 -23512 0.4 ZIC2 ZFHX2 EGR2 USF2 PEPD LOC105372370 LOC100996681
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100996681 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996681 Gene

Genomic Locations for LOC100996681 Gene
chr19:33,553,113-33,557,506
(GRCh38/hg38)
Size:
4,394 bases
Orientation:
Plus strand
chr19:34,046,474-34,048,376
(GRCh37/hg19)
Size:
1,903 bases
Orientation:
Plus strand

Genomic View for LOC100996681 Gene

Genes around LOC100996681 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996681 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996681 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996681 Gene

Proteins for LOC100996681 Gene

Post-translational modifications for LOC100996681 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100996681 Gene

Domains & Families for LOC100996681 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996681 Gene

Function for LOC100996681 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996681 Gene

Localization for LOC100996681 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996681 Gene

Pathways & Interactions for LOC100996681 Gene

PathCards logo

SuperPathways for LOC100996681 Gene

No Data Available

Interacting Proteins for LOC100996681 Gene

Gene Ontology (GO) - Biological Process for LOC100996681 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100996681 Gene

Drugs & Compounds for LOC100996681 Gene

No Compound Related Data Available

Transcripts for LOC100996681 Gene

mRNA/cDNA for LOC100996681 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996681 Gene

No ASD Table

Relevant External Links for LOC100996681 Gene

GeneLoc Exon Structure for
LOC100996681

Expression for LOC100996681 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100996681 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100996681 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with LOC100996681: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996681 Gene

Orthologs for LOC100996681 Gene

No data available for Orthologs and Evolution for LOC100996681 Gene

Paralogs for LOC100996681 Gene

No data available for Paralogs for LOC100996681 Gene

Variants for LOC100996681 Gene

Sequence variations from dbSNP and Humsavar for LOC100996681 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000026009 -- 33,553,294(+) T/C non_coding_transcript_variant
rs1000271057 -- 33,557,576(+) T/C downstream_transcript_variant
rs1000527994 -- 33,556,218(+) G/C intron_variant
rs1000578396 -- 33,552,041(+) T/A upstream_transcript_variant
rs1000853108 -- 33,553,752(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100996681 Gene

Disorders for LOC100996681 Gene

No disorders were found for LOC100996681 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100996681 Gene

Publications for LOC100996681 Gene

No publications were found for LOC100996681 Gene.

No data available for External Links for LOC100996681 Gene

Products for LOC100996681 Gene

Sources for LOC100996681 Gene

Content
Loading form....