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Aliases for LOC100996660 Gene

Subcategory (RNA class) for LOC100996660 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100996660 Gene

  • Uncharacterized LOC100996660 3
  • AC025048.2 5

External Ids for LOC100996660 Gene

Previous GeneCards Identifiers for LOC100996660 Gene

  • GC17U901791

Summaries for LOC100996660 Gene

GeneCards Summary for LOC100996660 Gene

LOC100996660 (Uncharacterized LOC100996660) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100996660 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996660 Gene

Genomics for LOC100996660 Gene

GeneHancer (GH) Regulatory Elements for LOC100996660 Gene

Promoters and enhancers for LOC100996660 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I060134 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 550.8 +0.5 515 2.2 PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 SLC30A9 E2F8 ZNF143 FOS GC17M060134 LOC100996660 HEATR6 PPM1D TUBD1 ENSG00000267095 GC17M060115
GH17I059564 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 37.8 +569.8 569809 2.1 CLOCK YBX1 DMAP1 IRF4 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 SP3 DHX40 HEATR6 APPBP2 TUBD1 NDUFB8P2 RPS6KB1 LOC100996660 SKA2 SMG8 TRIM37
GH17I059616 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.9 +516.1 516073 6.8 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 CLTC ENSG00000273702 TUBD1 RPS6KB1 HEATR6 SKA2 PPM1D DHX40 RNFT1 NDUFB8P2
GH17I059705 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14 +427.9 427875 5.2 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 E2F8 SP3 NFYC GLIS1 PTRH2 VMP1 PPM1D RPS6KB1 TUBD1 RNFT1 SKA2 NDUFB8P2 RNFT1-DT LOC100996660
GH17I060676 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14 -542.0 -542010 2.1 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 BCAS3 LOC100996660 PPM1D RPS6KB1 TUBD1 RN7SL606P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100996660 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996660 Gene

Genomic Locations for LOC100996660 Gene
chr17:60,126,535-60,135,748
(GRCh38/hg38)
Size:
9,214 bases
Orientation:
Minus strand

Genomic View for LOC100996660 Gene

Genes around LOC100996660 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996660 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996660 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996660 Gene

Proteins for LOC100996660 Gene

Post-translational modifications for LOC100996660 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100996660 Gene

Domains & Families for LOC100996660 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996660 Gene

Function for LOC100996660 Gene

Phenotypes From GWAS Catalog for LOC100996660 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996660 Gene

Localization for LOC100996660 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996660 Gene

Pathways & Interactions for LOC100996660 Gene

SuperPathways for LOC100996660 Gene

No Data Available

Interacting Proteins for LOC100996660 Gene

Gene Ontology (GO) - Biological Process for LOC100996660 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100996660 Gene

Drugs & Compounds for LOC100996660 Gene

No Compound Related Data Available

Transcripts for LOC100996660 Gene

mRNA/cDNA for LOC100996660 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100996660 Gene

Uncharacterized LOC100996660:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996660 Gene

No ASD Table

Relevant External Links for LOC100996660 Gene

GeneLoc Exon Structure for
LOC100996660

Expression for LOC100996660 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100996660 Gene

SOURCE GeneReport for Unigene cluster for LOC100996660 Gene:

Hs.445704
genes like me logo Genes that share expression patterns with LOC100996660: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996660 Gene

Orthologs for LOC100996660 Gene

Evolution for LOC100996660 Gene

ENSEMBL:
Gene Tree for LOC100996660 (if available)
TreeFam:
Gene Tree for LOC100996660 (if available)

No data available for Orthologs for LOC100996660 Gene

Paralogs for LOC100996660 Gene

No data available for Paralogs for LOC100996660 Gene

Variants for LOC100996660 Gene

Sequence variations from dbSNP and Humsavar for LOC100996660 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001004408 -- 60,133,389(-) A/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001524194 -- 60,136,543(-) G/A upstream_transcript_variant
rs1001671668 -- 60,130,393(-) T/C intron_variant
rs1001703791 -- 60,130,614(-) T/C/G intron_variant
rs1001760675 -- 60,136,707(-) C/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100996660 Gene

Disorders for LOC100996660 Gene

Additional Disease Information for LOC100996660

No disorders were found for LOC100996660 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100996660 Gene

Publications for LOC100996660 Gene

No publications were found for LOC100996660 Gene.

Products for LOC100996660 Gene

Sources for LOC100996660 Gene

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