Aliases for LOC100996583 Gene

Subcategory (RNA class) for LOC100996583 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100996583 Gene

  • Uncharacterized LOC100996583 3
  • Lnc-TNFRSF14-2 168
  • HSALNG0000279 167
  • NONHSAG000166 92

External Ids for LOC100996583 Gene

Previous GeneCards Identifiers for LOC100996583 Gene

  • GC01P002514
  • GC01P002577

Summaries for LOC100996583 Gene

GeneCards Summary for LOC100996583 Gene

LOC100996583 (Uncharacterized LOC100996583) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100996583 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100996583 Gene

Genomics for LOC100996583 Gene

GeneHancer (GH) Regulatory Elements for LOC100996583 Gene

Promoters and enhancers for LOC100996583 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100996583 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996583 Gene

Genomic Locations for LOC100996583 Gene
chr1:2,566,410-2,584,534
(GRCh38/hg38)
Size:
18,125 bases
Orientation:
Plus strand

Genomic View for LOC100996583 Gene

Genes around LOC100996583 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996583 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996583 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996583 Gene

Proteins for LOC100996583 Gene

Post-translational modifications for LOC100996583 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100996583 Gene

Domains & Families for LOC100996583 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100996583 Gene

Function for LOC100996583 Gene

Phenotypes From GWAS Catalog for LOC100996583 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996583 Gene

Localization for LOC100996583 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996583 Gene

Pathways & Interactions for LOC100996583 Gene

PathCards logo

SuperPathways for LOC100996583 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100996583 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100996583 Gene

Drugs & Compounds for LOC100996583 Gene

No Compound Related Data Available

Transcripts for LOC100996583 Gene

mRNA/cDNA for LOC100996583 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996583 Gene

No ASD Table

Relevant External Links for LOC100996583 Gene

GeneLoc Exon Structure for
LOC100996583

Expression for LOC100996583 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100996583 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100996583

SOURCE GeneReport for Unigene cluster for LOC100996583 Gene:

Hs.444114
genes like me logo Genes that share expression patterns with LOC100996583: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996583 Gene

Orthologs for LOC100996583 Gene

No data available for Orthologs and Evolution for LOC100996583 Gene

Paralogs for LOC100996583 Gene

No data available for Paralogs for LOC100996583 Gene

Variants for LOC100996583 Gene

Additional dbSNP identifiers (rs#s) for LOC100996583 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100996583 Gene

Variant ID Type Subtype PubMed ID
dgv1n47 OTHER inversion 21111241
dgv1n50 OTHER inversion 21212237
dgv5n67 CNV loss 20364138
esv1699286 OTHER inversion 17803354
esv2471749 OTHER inversion 19546169
esv3447351 OTHER inversion 20981092
esv3582248 CNV gain 25503493
nsv470684 CNV loss 18288195
nsv545077 CNV gain 21841781
nsv545082 CNV loss 21841781
nsv545083 CNV gain 21841781
nsv7171 OTHER inversion 18451855
nsv829648 CNV loss 17160897
nsv951592 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100996583 Gene

Disorders for LOC100996583 Gene

No disorders were found for LOC100996583 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100996583 Gene

Publications for LOC100996583 Gene

  1. Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. (PMID: 21297633) Anderson CA … Rioux JD (Nature genetics 2011) 3 54
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

No data available for Mastermind for LOC100996583 Gene

Products for LOC100996583 Gene

Sources for LOC100996583 Gene