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Aliases for LOC100996517 Gene

Aliases for LOC100996517 Gene

  • Vesicle-Trafficking Protein SEC22b 3
  • AC245389.2 5

External Ids for LOC100996517 Gene

Previous GeneCards Identifiers for LOC100996517 Gene

  • GC01U903419

Summaries for LOC100996517 Gene

GeneCards Summary for LOC100996517 Gene

LOC100996517 (Vesicle-Trafficking Protein SEC22b) is a Protein Coding gene.

Additional gene information for LOC100996517 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996517 Gene

Genomics for LOC100996517 Gene

GeneHancer (GH) Regulatory Elements for LOC100996517 Gene

Promoters and enhancers for LOC100996517 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I148790 Enhancer 1.2 Ensembl ENCODE 550.8 +0.4 413 2.4 ARID4B SIN3A FEZF1 ZNF2 YY1 ETS1 TCF12 GLIS2 ZNF213 KLF7 LOC100996517 LOC101927468 LOC647481 GPR89B ENSG00000227700 GC01P148750
GH01I148793 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.8 -2.1 -2144 1.3 PKNOX1 ATF1 ZNF493 GLI4 TCF12 ZNF766 ZNF416 CAVIN1 YY2 ZNF592 ENSG00000271546 PDE4DIP GPR89B LOC647481 ENSG00000227700 LOC101927468 LOC100996517
GH01I148795 Enhancer 0.8 Ensembl ENCODE 0.8 -3.8 -3819 1.1 ZNF132 ZIC2 ZBTB40 ZFP69B MEF2D ZNF335 PRDM6 CBX8 ZNF692 ZFX ENSG00000271546 LOC101927468 LOC100996517
GH01I148771 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +17.9 17863 4.7 HDGF PKNOX1 FOXA2 RB1 ARNT ZNF493 ZFP64 BRCA1 RAD21 ZBTB40 LOC647481 PDE4DIP GPR89B LOC101927468 LOC100996517 GC01P148750
GH01I148789 Enhancer 0.7 Ensembl 0.8 +2.2 2213 0.4 GTF2E2 ETV1 ZMYM3 ZNF324 ZNF316 ADNP ZNF143 ZNF350 MAFK ZBTB11 LOC101927468 LOC100996517 GC01P148750
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100996517 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996517 Gene

Genomic Locations for LOC100996517 Gene
chr1:148,767,753-148,791,814
(GRCh38/hg38)
Size:
24,062 bases
Orientation:
Minus strand

Genomic View for LOC100996517 Gene

Genes around LOC100996517 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996517 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996517 Gene

Proteins for LOC100996517 Gene

Post-translational modifications for LOC100996517 Gene

No Post-translational modifications

Other Protein References for LOC100996517 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100996517 Gene

Domains & Families for LOC100996517 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996517 Gene

Function for LOC100996517 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996517 Gene

Localization for LOC100996517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996517 Gene

Pathways & Interactions for LOC100996517 Gene

SuperPathways for LOC100996517 Gene

No Data Available

Interacting Proteins for LOC100996517 Gene

Gene Ontology (GO) - Biological Process for LOC100996517 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100996517 Gene

Drugs & Compounds for LOC100996517 Gene

No Compound Related Data Available

Transcripts for LOC100996517 Gene

mRNA/cDNA for LOC100996517 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100996517 Gene

Vesicle-trafficking protein SEC22b-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996517 Gene

No ASD Table

Relevant External Links for LOC100996517 Gene

GeneLoc Exon Structure for
LOC100996517

Expression for LOC100996517 Gene

SOURCE GeneReport for Unigene cluster for LOC100996517 Gene:

Hs.744705
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996517 Gene

Orthologs for LOC100996517 Gene

Evolution for LOC100996517 Gene

ENSEMBL:
Gene Tree for LOC100996517 (if available)
TreeFam:
Gene Tree for LOC100996517 (if available)

No data available for Orthologs for LOC100996517 Gene

Paralogs for LOC100996517 Gene

No data available for Paralogs for LOC100996517 Gene

Variants for LOC100996517 Gene

Sequence variations from dbSNP and Humsavar for LOC100996517 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs10399653 -- 148,786,146(-) T/G 5_prime_UTR_variant
rs1048016 -- 148,772,269(-) G/A 3_prime_UTR_variant
rs10611288 -- 148,776,925(-) TTATT/TT intron_variant
rs10752807 -- 148,773,420(-) C/T intron_variant
rs10752808 -- 148,766,628(-) C/T 3_prime_UTR_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100996517 Gene

Disorders for LOC100996517 Gene

No disorders were found for LOC100996517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100996517 Gene

Publications for LOC100996517 Gene

No publications were found for LOC100996517 Gene.

Products for LOC100996517 Gene

Sources for LOC100996517 Gene

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