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Aliases for LOC100996404 Gene

Subcategory (RNA class) for LOC100996404 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100996404 Gene

  • Uncharacterized LOC100996404 3
  • CTA-407F11.8 3

External Ids for LOC100996404 Gene

Previous GeneCards Identifiers for LOC100996404 Gene

  • GC22M025958

Summaries for LOC100996404 Gene

GeneCards Summary for LOC100996404 Gene

LOC100996404 (Uncharacterized LOC100996404) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100996404 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100996404 Gene

Genomics for LOC100996404 Gene

GeneHancer (GH) Regulatory Elements for LOC100996404 Gene

Promoters and enhancers for LOC100996404 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J025562 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 600.7 -1.5 -1481 8.3 ZNF652 ZFX ELF3 ZNF148 NKRF ZNF121 CEBPG POLR2A MYC TFE3 ENSG00000234884 LOC100996404 GRK3 ENSG00000272977 YES1P1 ENSG00000237387
GH22J025563 Promoter 0.8 Ensembl 0.7 +2.8 2792 0.2 ZNF121 IKZF1 IKZF2 ELF1 NR2F1 EBF1 LOC100996404 ENSG00000234884 GRK3
GH22J025572 Enhancer 0.8 dbSUPER 0.4 -10.0 -9976 5.3 ZNF687 MAFK CREM MLLT1 IKZF1 BACH1 IKZF2 TRIM22 PKNOX1 ZNF316 ENSG00000272977 ENSG00000237387 LOC100996404 GRK3
GH22J025578 Enhancer 0.4 dbSUPER 0.4 -13.8 -13757 1.1 ZBTB33 EGR2 ENSG00000272977 ENSG00000237387 LOC100996404 GRK3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100996404 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996404 Gene

Genomic Locations for LOC100996404 Gene
chr22:25,561,120-25,564,893
(GRCh38/hg38)
Size:
3,774 bases
Orientation:
Minus strand
chr22:25,957,084-25,960,429
(GRCh37/hg19)
Size:
3,346 bases
Orientation:
Minus strand

Genomic View for LOC100996404 Gene

Genes around LOC100996404 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996404 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996404 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996404 Gene

Proteins for LOC100996404 Gene

Post-translational modifications for LOC100996404 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100996404 Gene

Domains & Families for LOC100996404 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100996404 Gene

Function for LOC100996404 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996404 Gene

Localization for LOC100996404 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996404 Gene

Pathways & Interactions for LOC100996404 Gene

PathCards logo

SuperPathways for LOC100996404 Gene

No Data Available

Interacting Proteins for LOC100996404 Gene

Gene Ontology (GO) - Biological Process for LOC100996404 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100996404 Gene

Drugs & Compounds for LOC100996404 Gene

No Compound Related Data Available

Transcripts for LOC100996404 Gene

Unigene Clusters for LOC100996404 Gene

Uncharacterized LOC100996404:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996404 Gene

No ASD Table

Relevant External Links for LOC100996404 Gene

GeneLoc Exon Structure for
LOC100996404

No data available for mRNA/cDNA for LOC100996404 Gene

Expression for LOC100996404 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100996404 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100996404 Gene

This gene is overexpressed in Testis (x42.9).

SOURCE GeneReport for Unigene cluster for LOC100996404 Gene:

Hs.736836
genes like me logo Genes that share expression patterns with LOC100996404: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996404 Gene

Orthologs for LOC100996404 Gene

No data available for Orthologs and Evolution for LOC100996404 Gene

Paralogs for LOC100996404 Gene

No data available for Paralogs for LOC100996404 Gene

Variants for LOC100996404 Gene

Sequence variations from dbSNP and Humsavar for LOC100996404 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1003488436 -- 25,565,564(-) CC/C upstream_transcript_variant
rs1003770283 -- 25,565,817(-) G/T upstream_transcript_variant
rs1005031775 -- 25,565,298(-) T/C upstream_transcript_variant
rs1005704260 -- 25,563,114(-) T/G non_coding_transcript_variant
rs1005730854 -- 25,563,330(-) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100996404 Gene

Disorders for LOC100996404 Gene

No disorders were found for LOC100996404 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100996404 Gene

Publications for LOC100996404 Gene

No publications were found for LOC100996404 Gene.

No data available for External Links for LOC100996404 Gene

Products for LOC100996404 Gene

Sources for LOC100996404 Gene

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