Aliases for LOC100996263 Gene

Subcategory (RNA class) for LOC100996263 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100996263 Gene

  • Uncharacterized LOC100996263 3
  • Novel Transcript 5
  • NONHSAG002555 92
  • HSALNG0006392 167
  • Lnc-GDAP2-1 168
  • AL157902.1 5

External Ids for LOC100996263 Gene

Previous GeneCards Identifiers for LOC100996263 Gene

  • GC01M118140

Summaries for LOC100996263 Gene

GeneCards Summary for LOC100996263 Gene

LOC100996263 (Uncharacterized LOC100996263) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100996263 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100996263 Gene

Genomics for LOC100996263 Gene

GeneHancer (GH) Regulatory Elements for LOC100996263 Gene

Promoters and enhancers for LOC100996263 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J117604 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 507.7 -1.0 -950 5.6 ZNF217 SIN3A NRF1 POLR2G GTF2E2 PHF8 ZNF639 ZNF10 ZBTB5 ZIC2 TENT5C LOC100996263 piR-56716 ENSG00000271427 ENSG00000212266
GH01J117626 Enhancer 0.9 Ensembl ENCODE dbSUPER 20.1 -21.1 -21079 2.1 ZNF316 ESR1 MEF2B JUND SPI1 GATA3 FOXA1 DPF2 SMARCE1 NFATC3 LOC100996263 TENT5C ENSG00000212266 VDAC2P3 piR-56716
GH01J117662 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 11.4 -57.9 -57934 4.1 SP1 EP300 RELA MEF2C TOE1 RCOR1 CTBP1 TRIM22 EZH2 BCL11A TENT5C ENSG00000212266 LOC100996263 MAN1A2 lnc-GDAP2-9 HSALNG0006398
GH01J117644 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.8 -38.3 -38300 1.1 PHB2 ZBTB11 AFF1 TARDBP REST HES1 MYC RUNX1 CTBP1 HDAC3 ENSG00000212266 LOC100996263 TENT5C VDAC2P3 lnc-GDAP2-9
GH01J117569 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.8 +34.3 34345 5.4 ZNF217 NRF1 ZIC2 RFX1 CUX1 ZNF740 GATAD2B CTBP1 SIN3A ESRRA TENT5C LOC100996263 ENSG00000212266 VPS25P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100996263 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100996263 Gene

Genomic Locations for LOC100996263 Gene
chr1:117,596,832-117,606,663
(GRCh38/hg38)
Size:
9,832 bases
Orientation:
Minus strand
chr1:118,139,454-118,148,392
(GRCh37/hg19)
Size:
8,939 bases
Orientation:
Minus strand

Genomic View for LOC100996263 Gene

Genes around LOC100996263 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100996263 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100996263 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100996263 Gene

Proteins for LOC100996263 Gene

Post-translational modifications for LOC100996263 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100996263 Gene

Domains & Families for LOC100996263 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100996263 Gene

Function for LOC100996263 Gene

Phenotypes From GWAS Catalog for LOC100996263 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100996263 Gene

Localization for LOC100996263 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100996263 Gene

Pathways & Interactions for LOC100996263 Gene

PathCards logo

SuperPathways for LOC100996263 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100996263 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100996263 Gene

Drugs & Compounds for LOC100996263 Gene

No Compound Related Data Available

Transcripts for LOC100996263 Gene

mRNA/cDNA for LOC100996263 Gene

18 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
12 NONCODE transcripts :
8 LncBook transcripts :
17 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100996263 Gene

No ASD Table

Relevant External Links for LOC100996263 Gene

GeneLoc Exon Structure for
LOC100996263

Expression for LOC100996263 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100996263 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100996263

SOURCE GeneReport for Unigene cluster for LOC100996263 Gene:

Hs.202533
genes like me logo Genes that share expression patterns with LOC100996263: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100996263 Gene

Orthologs for LOC100996263 Gene

Evolution for LOC100996263 Gene

ENSEMBL:
Gene Tree for LOC100996263 (if available)
TreeFam:
Gene Tree for LOC100996263 (if available)

No data available for Orthologs for LOC100996263 Gene

Paralogs for LOC100996263 Gene

No data available for Paralogs for LOC100996263 Gene

Variants for LOC100996263 Gene

Additional dbSNP identifiers (rs#s) for LOC100996263 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100996263 Gene

Variant ID Type Subtype PubMed ID
nsv831170 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100996263 Gene

Disorders for LOC100996263 Gene

No disorders were found for LOC100996263 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100996263 Gene

Publications for LOC100996263 Gene

No publications were found for LOC100996263 Gene.

No data available for Mastermind for LOC100996263 Gene

Products for LOC100996263 Gene

Sources for LOC100996263 Gene