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Aliases for LOC100652999 Gene

Subcategory (RNA class) for LOC100652999 Gene


Quality Score for this RNA gene is


Aliases for LOC100652999 Gene

  • Uncharacterized LOC100652999 3
  • Novel Transcript, Antisense To ATF7 5
  • AC023509.2 5

External Ids for LOC100652999 Gene

Previous GeneCards Identifiers for LOC100652999 Gene

  • GC12U901623
  • GC12P053909

Summaries for LOC100652999 Gene

GeneCards Summary for LOC100652999 Gene

LOC100652999 (Uncharacterized LOC100652999) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100652999 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100652999 Gene

Genomics for LOC100652999 Gene

GeneHancer (GH) Regulatory Elements for LOC100652999 Gene

Promoters and enhancers for LOC100652999 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J053515 Promoter 0.5 EPDnew 600.7 +1.7 1654 0.1 LOC100652999 ATF7 C12orf10 AMHR2 ATP5MC2 PFDN5 ENSG00000285692 ENSG00000267281
GH12J053971 Promoter/Enhancer 3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 40.7 +489.3 489328 63 ZNF652 ZFX SP1 CC2D1A CTCF ELF3 ZKSCAN8 CBFA2T2 ZNF148 NKRF HOXC8 HOXC11 HOXC4 HOXC9 HOXC6 HOXC10 HOXC5 GC12P054063 GC12P054146 GC12P054147
GH12J052894 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 40.2 -611.1 -611056 16.1 MTA3 ZNF652 ZFX CC2D1A SP1 ELF3 CTCF MNT CBFA2T2 ZNF148 GC12M052900 ZNF740 AAAS PCBP2 SP1 MAP3K12 LOC100652999 ENSG00000257808 ATF7 TARBP2
GH12J053179 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 38.5 -332.3 -332266 4.8 CC2D1A ZFX ELF3 MNT SIX5 ZNF148 POLR2A MLLT1 GTF2F1 ZNF687 ZNF740 CSAD ATF7 PCBP2 LOC100652999 CALCOCO1 AAAS SP1 TARBP2 ENSG00000270175
GH12J053696 Enhancer 1.3 VISTA Ensembl ENCODE 41 +188.3 188342 10.9 CC2D1A CTCF ZNF121 AHR SP7 ZNF680 RAD21 CREB1 PKNOX1 ARID2 SP1 ATF7 AAAS HNRNPA1 ZNF740 PCBP2 ENSG00000258344 LOC100652999 CALCOCO1 ATP5MC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100652999 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100652999 Gene

Genomic Locations for LOC100652999 Gene
3,625 bases
Plus strand
3,625 bases
Plus strand

Genomic View for LOC100652999 Gene

Genes around LOC100652999 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100652999 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100652999 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100652999 Gene

Proteins for LOC100652999 Gene

Post-translational modifications for LOC100652999 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100652999 Gene

Domains & Families for LOC100652999 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100652999 Gene

Function for LOC100652999 Gene

Phenotypes From GWAS Catalog for LOC100652999 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100652999 Gene

Localization for LOC100652999 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100652999 Gene

Pathways & Interactions for LOC100652999 Gene

PathCards logo

SuperPathways for LOC100652999 Gene

No Data Available

Interacting Proteins for LOC100652999 Gene

Gene Ontology (GO) - Biological Process for LOC100652999 Gene


No data available for Pathways by source and SIGNOR curated interactions for LOC100652999 Gene

Drugs & Compounds for LOC100652999 Gene

No Compound Related Data Available

Transcripts for LOC100652999 Gene

mRNA/cDNA for LOC100652999 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100652999 Gene

Uncharacterized LOC100652999:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100652999 Gene

No ASD Table

Relevant External Links for LOC100652999 Gene

GeneLoc Exon Structure for

Expression for LOC100652999 Gene

SOURCE GeneReport for Unigene cluster for LOC100652999 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100652999 Gene

Orthologs for LOC100652999 Gene

Evolution for LOC100652999 Gene

Gene Tree for LOC100652999 (if available)
Gene Tree for LOC100652999 (if available)

No data available for Orthologs for LOC100652999 Gene

Paralogs for LOC100652999 Gene

No data available for Paralogs for LOC100652999 Gene

Variants for LOC100652999 Gene

Sequence variations from dbSNP and Humsavar for LOC100652999 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1001115283 -- 53,517,572(+) C/T non_coding_transcript_variant
rs1002297099 -- 53,516,723(+) T/ non_coding_transcript_variant
rs1002349380 -- 53,516,491(+) G/T non_coding_transcript_variant
rs1002620893 -- 53,514,952(+) G/T intron_variant
rs1003302179 -- 53,515,123(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100652999 Gene

Variant ID Type Subtype PubMed ID
nsv983486 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100652999 Gene

Disorders for LOC100652999 Gene

No disorders were found for LOC100652999 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100652999 Gene

Publications for LOC100652999 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC100652999 Gene

Products for LOC100652999 Gene

Sources for LOC100652999 Gene

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