Aliases for LOC100652768 Gene

Data sources for LOC100652768 Gene:

RNA type for LOC100652768 Gene

lncRNA

Aliases for LOC100652768 Gene

External Ids for LOC100652768 Gene

Previous GeneCards Identifiers for LOC100652768 Gene

  • GC11U901897
  • GC11M117069

Summaries for LOC100652768 Gene

GeneCards Summary for LOC100652768 Gene

LOC100652768 (Uncharacterized LOC100652768) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100652768 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100652768 Gene

Genomics for LOC100652768 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100652768 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J117197 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.1 99 9.3 POLR2A ZIC2 CTCF SIN3A YY1 RAD21 ZBTB40 REST TAF1 EGR1 LOC100652768 TAGLN ENSG00000254851 PCSK7 APOA1 RNF214 SIDT2 ENSG00000280143 lnc-TAGLN-1
GH11J117195 Enhancer 0.5 Ensembl ENCODE dbSUPER 0.4 +6.4 6413 1 ENSG00000254851 SIDT2 TAGLN piR-59581 LOC100652768
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100652768 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100652768 Gene

Latest Assembly
chr11:117,195,612-117,201,914
(GRCh38/hg38)
Size:
6,303 bases
Orientation:
Minus strand

Previous Assembly
chr11:117,066,329-117,072,630
(GRCh37/hg19 by Entrez Gene)
Size:
6,302 bases
Orientation:
Minus strand

Genomic View for LOC100652768 Gene

Genes around LOC100652768 on UCSC Golden Path with GeneCards custom track
LOC100652768 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100652768 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100652768 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100652768 Gene

Proteins for LOC100652768 Gene

Post-translational modifications for LOC100652768 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100652768 Gene

Domains & Families for LOC100652768 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100652768 Gene

Function for LOC100652768 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100652768 Gene

Localization for LOC100652768 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100652768 Gene

Pathways & Interactions for LOC100652768 Gene

PathCards logo

SuperPathways for LOC100652768 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100652768 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100652768 Gene

Drugs & Compounds for LOC100652768 Gene

No Compound Related Data Available

Transcripts for LOC100652768 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100652768 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075AE67_9606 lncRNA 1244 1

RefSeq: NR_045215,

URS00008B8348_9606 lncRNA 3598 2

LNCipedia: lnc-PCSK7-1:4,

NONCODE: NONHSAT024384.2,

URS00008B996D_9606 lncRNA 2401 2

LNCipedia: lnc-PCSK7-1:1,

NONCODE: NONHSAT024387.2,

URS00008B40F9_9606 lncRNA 1250 2

LNCipedia: lnc-PCSK7-1:2,

NONCODE: NONHSAT024386.2,

URS00008BB314_9606 lncRNA 1244 2

LNCipedia: lnc-PCSK7-1:3,

NONCODE: NONHSAT024385.2,

LOC100652768 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100652768 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100652768 Gene

No ASD Table

Relevant External Links for LOC100652768 Gene

GeneLoc Exon Structure for
LOC100652768

Expression for LOC100652768 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100652768 Gene

mRNA expression in normal human tissues for LOC100652768 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100652768

SOURCE GeneReport for Unigene cluster for LOC100652768 Gene:

Hs.732365
genes like me logo Genes that share expression patterns with LOC100652768: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100652768 Gene

Orthologs for LOC100652768 Gene

No data available for Orthologs and Evolution for LOC100652768 Gene

Paralogs for LOC100652768 Gene

No data available for Paralogs for LOC100652768 Gene

Variants for LOC100652768 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100652768 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100652768 Gene

Variant ID Type Subtype PubMed ID
dgv2186n54 CNV loss 21841781
dgv730n106 OTHER inversion 24896259
nsv1078301 OTHER inversion 25765185
nsv518908 CNV loss 19592680
nsv524270 CNV loss 19592680
nsv7223 OTHER inversion 18451855

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100652768 Gene

Disorders for LOC100652768 Gene

No disorders were found for LOC100652768 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100652768 Gene

Publications for LOC100652768 Gene

No publications were found for LOC100652768 Gene.

No data available for Mastermind for LOC100652768 Gene

Products for LOC100652768 Gene

Sources for LOC100652768 Gene