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Aliases for LOC100652768 Gene
Data sources for LOC100652768 Gene:
RNA type for LOC100652768 Gene
lncRNA
Aliases for LOC100652768 Gene
- Uncharacterized LOC100652768 (NCBI Entrez Gene)
- NONHSAG009721.2 (NONCODE)
- HSALNG0087440 (LncBook)
- Lnc-PCSK7-1 (LNCipedia)
External Ids for LOC100652768 Gene
- NCBI Entrez Gene: 100652768
Previous GeneCards Identifiers for LOC100652768 Gene
- GC11U901897
- GC11M117069
Summaries for LOC100652768 Gene
GeneCards Summary for LOC100652768 Gene
LOC100652768 (Uncharacterized LOC100652768) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100652768 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100652768 Gene
Genomics for LOC100652768 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100652768 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J117197 | Promoter/Enhancer | 1.7 | EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER | 250.7 | +0.1 | 99 | 9.3 | POLR2A ZIC2 CTCF SIN3A YY1 RAD21 ZBTB40 REST TAF1 EGR1 | LOC100652768 TAGLN ENSG00000254851 PCSK7 APOA1 RNF214 SIDT2 ENSG00000280143 lnc-TAGLN-1 | |
| GH11J117195 | Enhancer | 0.5 | Ensembl ENCODE dbSUPER | 0.4 | +6.4 | 6413 | 1 | ENSG00000254851 SIDT2 TAGLN piR-59581 LOC100652768 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100652768 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC100652768 Gene
Latest Assembly
- chr11:117,195,612-117,201,914
- (GRCh38/hg38)
- Size:
- 6,303 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:117,066,329-117,072,630
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 6,302 bases
- Orientation:
- Minus strand
Genomic View for LOC100652768 Gene
Genes around LOC100652768 on UCSC Golden Path with GeneCards custom track
LOC100652768 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q23.3 by Entrez Gene
LOC100652768 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100652768 Gene
Proteins for LOC100652768 Gene
Post-translational modifications for LOC100652768 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC100652768 Gene
Domains & Families for LOC100652768 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100652768 Gene
Function for LOC100652768 Gene
Phenotypes From GWAS Catalog for LOC100652768 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100652768 Gene
Localization for LOC100652768 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100652768 Gene
Transcripts for LOC100652768 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100652768 Gene
| RNAcentral Transcript ID | RNA Type | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075AE67_9606 | lncRNA | 1244 | 1 |
RefSeq: NR_045215, |
| URS00008B8348_9606 | lncRNA | 3598 | 2 |
LNCipedia: lnc-PCSK7-1:4, NONCODE: NONHSAT024384.2, |
| URS00008B996D_9606 | lncRNA | 2401 | 2 |
LNCipedia: lnc-PCSK7-1:1, NONCODE: NONHSAT024387.2, |
| URS00008B40F9_9606 | lncRNA | 1250 | 2 |
LNCipedia: lnc-PCSK7-1:2, NONCODE: NONHSAT024386.2, |
| URS00008BB314_9606 | lncRNA | 1244 | 2 |
LNCipedia: lnc-PCSK7-1:3, NONCODE: NONHSAT024385.2, |
LOC100652768 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100652768 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC100652768 Gene
- GeneLoc Exon Structure for
- LOC100652768
Expression for LOC100652768 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100652768
SOURCE GeneReport for Unigene cluster for LOC100652768 Gene:
Hs.732365
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100652768 Gene
Orthologs for LOC100652768 Gene
No data available for Orthologs and Evolution for LOC100652768 Gene
Paralogs for LOC100652768 Gene
No data available for Paralogs for LOC100652768 Gene
Variants for LOC100652768 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv2186n54 | CNV | loss | 21841781 |
| dgv730n106 | OTHER | inversion | 24896259 |
| nsv1078301 | OTHER | inversion | 25765185 |
| nsv518908 | CNV | loss | 19592680 |
| nsv524270 | CNV | loss | 19592680 |
| nsv7223 | OTHER | inversion | 18451855 |
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100652768 Gene
Disorders for LOC100652768 Gene
No disorders were found for LOC100652768 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100652768 Gene
Publications for LOC100652768 Gene
No publications were found for LOC100652768 Gene.
No data available for Mastermind for LOC100652768 Gene
Products for LOC100652768 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100652768
- Origene Custom Protein Services for LOC100652768
- Browse OriGene Inhibitory RNA Products For LOC100652768
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100652768
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100652768
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100652768
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100652768
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100652768
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100652768
Sources for LOC100652768 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Apr-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) ASD
- (27) SAGE
- (28) SOURCE
- (29) HomoloGene
- (30) PanEnsembl
- (31) euGenes
- (32) SGD
- (33) FlyBase
- (34) WormBase
- (35) Pseudogene
- (36) DGV
- (37) dbSNP
- (38) GenAtlas
- (39) HGMD
- (40) GAD
- (41) BGMUT
- (42) HuGE
- (43) Atlas
- (44) GenBank
- (45) HORDE
- (46) HUGE
- (47) IMGT
- (48) Leiden
- (49) miRBase
- (50) DME
- (51) OriGene
- (52) PubMed
- (53) R&D Systems
- (54) Tocris
- (55) Abcam
- (56) Novus Biologicals
- (57) ProSpec
- (58) Sino Biological
- (59) GenScript
- (60) Qiagen
- (61) OCA
- (62) Proteopedia
- (63) MOPED
- (64) neXtProt
- (65) Reactome
- (66) GeneGo (Thomson Reuters)
- (67) DISEASES
- (68) SIMAP
- (69) GenomeRNAi
- (70) LifeMap
- (71) miRTarBase
- (72) MalaCards
- (73) Invitrogen
- (74) BitterDB
- (75) ESI-BIO
- (76) RefSeq
- (77) BioSystems
- (78) MaxQB
- (79) IUPHAR
- (80) BioGPS
- (81) Illumina
- (82) COMPARTMENTS
- (83) HOMER
- (84) PaxDb
- (85) ApexBio
- (86) Addgene
- (87) antibodies-online
- (88) CYP
- (89) NONCODE
- (90) TreeFam
- (91) PathCards
- (92) GeneReviews
- (93) GeneTex
- (94) Taconic Biosciences
- (95) GTEx
- (96) ProteomicsDB
- (97) SCBT
- (98) DGIdb
- (99) ClinicalTrials
- (100) RVIS
- (101) SIGNOR
- (102) diseasecard
- (103) NIH Rare Diseases
- (104) Orphanet
- (105) UMLS
- (106) GTR
- (107) Disease Ontology
- (108) MedlinePlus Genetics
- (109) MeSH
- (110) MedlinePlus
- (111) CDC
- (112) NINDS
- (113) NCBI Bookshelf
- (114) ClinVar
- (115) Gene Damage Index
- (116) HPO
- (117) UDN
- (118) VISTA
- (119) FANTOM5
- (120) ENCODE
- (121) ProSci
- (122) Horizon
- (123) The Signaling Pathways Project (SPP)
- (124) IID
- (125) VectorBuilder
- (126) SNPedia
- (127) BRCA Exchange
- (128) CIViC
- (129) ProteoGenix
- (130) dbSUPER
- (131) TISSUES
- (132) Gene ORGANizer
- (133) abm
- (134) Human Protein Atlas
- (135) GWAS Catalog
- (136) Monarch Initiative
- (137) DataMed
- (138) HumanCyc
- (139) UCNEbase
- (140) EPDnew
- (141) Applied Biosystems
- (142) GlyConnect
- (143) Aminode
- (144) GeneCopoeia
- (145) GPS-Prot
- (146) RNAcentral
- (147) LncRNADisease
- (148) LOVD
- (149) miR2Disease
- (150) DiseaseEnhancer
- (151) Boster Bio
- (152) Biorbyt
- (153) Biocompare
- (154) Mastermind
- (155) CTD^2 Dashboard
- (156) CraniofacialAtlas
- (157) GeneImprint
- (158) Synthego
- (159) ENA
- (160) GtRNAdb
- (161) LncBase
- (162) LncBook
- (163) LNCipedia
- (164) Modomics
- (165) PDBe
- (166) Rfam
- (167) SILVA
- (168) snOPY
- (169) SRPDB
- (170) GENCODE
- (171) TarBase
- (172) Open Targets Platform
- (173) 5SRRNADB
- (174) snoDB
- (175) MirGeneDB
- (176) Alliance of Genome Resources