Aliases for LOC100526839 Gene

Aliases for LOC100526839 Gene

  • Chromosome 18 Open Reading Frame 32 Pseudogene 3

External Ids for LOC100526839 Gene

Previous GeneCards Identifiers for LOC100526839 Gene

  • GC01U903140

Summaries for LOC100526839 Gene

GeneCards Summary for LOC100526839 Gene

LOC100526839 (Chromosome 18 Open Reading Frame 32 Pseudogene) is a Pseudogene.

Additional gene information for LOC100526839 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100526839 Gene

Genomics for LOC100526839 Gene

GeneHancer (GH) Regulatory Elements for LOC100526839 Gene

Promoters and enhancers for LOC100526839 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J183585 Enhancer 0.7 ENCODE dbSUPER 500.7 -2.0 -1999 0.2 RFX1 ZFHX2 BMI1 KLF17 TCF7L2 KLF1 EGR2 LOC100526839 ARPC5 NCF2 lnc-ARPC5-2 SMG7
GH01J183586 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.3 2329 4.1 RXRA ZBTB40 SIN3A SP1 EP300 RELA MEF2C RCOR1 CTBP1 REST NCF2 ARPC5 APOBEC4 SMG7-AS1 SMG7 LOC100526839
GH01J183579 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.4 -6.6 -6571 1.3 CTCF ZIC2 ZBTB11 CTBP1 SPI1 NR2F2 MYC STAT5A IKZF1 RAD21 NCF2 SMG7 ARPC5 LOC100526839 lnc-ARPC5-2
GH01J183567 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -16.2 -16239 8.6 REST TOE1 RUNX1 CTBP1 TAF9B NCOR1 ESRRA WT1 NFIC ZBTB17 SMG7 lnc-ARPC5-2 LOC100526839 NCF2
GH01J183583 Enhancer 0.7 FANTOM5 dbSUPER 0.7 -3.5 -3489 0.4 FOS BHLHE40 CEBPB STAT3 NCF2 ARPC5 LOC100526839 lnc-ARPC5-2 SMG7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100526839 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100526839 Gene

Genomic Locations for LOC100526839 Gene
chr1:183,587,140-183,588,580
(GRCh38/hg38)
Size:
1,441 bases
Orientation:
Plus strand
chr1:183,556,275-183,557,715
(GRCh37/hg19)
Size:
1,441 bases
Orientation:
Plus strand

Genomic View for LOC100526839 Gene

Genes around LOC100526839 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100526839 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100526839 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100526839 Gene

Proteins for LOC100526839 Gene

Post-translational modifications for LOC100526839 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100526839 Gene

Domains & Families for LOC100526839 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100526839 Gene

Function for LOC100526839 Gene

Phenotypes From GWAS Catalog for LOC100526839 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100526839 Gene

Localization for LOC100526839 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100526839 Gene

Pathways & Interactions for LOC100526839 Gene

PathCards logo

SuperPathways for LOC100526839 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100526839 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100526839 Gene

Drugs & Compounds for LOC100526839 Gene

No Compound Related Data Available

Transcripts for LOC100526839 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100526839 Gene

No ASD Table

Relevant External Links for LOC100526839 Gene

GeneLoc Exon Structure for
LOC100526839

No data available for mRNA/cDNA for LOC100526839 Gene

Expression for LOC100526839 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100526839 Gene

Orthologs for LOC100526839 Gene

No data available for Orthologs and Evolution for LOC100526839 Gene

Paralogs for LOC100526839 Gene

No data available for Paralogs for LOC100526839 Gene

Variants for LOC100526839 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100526839 Gene

Disorders for LOC100526839 Gene

No disorders were found for LOC100526839 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100526839 Gene

Publications for LOC100526839 Gene

No publications were found for LOC100526839 Gene.

No data available for Mastermind for LOC100526839 Gene

Products for LOC100526839 Gene

Sources for LOC100526839 Gene