Aliases for LOC100507642 Gene

Subcategory (RNA class) for LOC100507642 Gene

ncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC100507642 Gene

  • Uncharacterized LOC100507642 3

External Ids for LOC100507642 Gene

Summaries for LOC100507642 Gene

GeneCards Summary for LOC100507642 Gene

LOC100507642 (Uncharacterized LOC100507642) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100507642 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507642 Gene

Genomics for LOC100507642 Gene

GeneHancer (GH) Regulatory Elements for LOC100507642 Gene

Promoters and enhancers for LOC100507642 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J000148 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.1 117 3.3 ZNF217 NRF1 MYC POLR2G USF1 GTF2E2 PHF8 ZNF639 ZIC2 REST ENSG00000240859 ENSG00000242474 LOC102723672 LOC100507642 ENSG00000261795 ENSG00000240093 FAM20C ENSG00000242611
GH07J000155 Enhancer 0.4 Ensembl 0.4 +6.2 6210 1.7 CUX1 SMARCA4 SUZ12 FAM20C ENSG00000240093 ENSG00000240859 ENSG00000242474 ENSG00000242611 ENSG00000261795 LOC100507642
GH07J000161 Enhancer 0.2 Ensembl 0.4 +12.1 12083 0.4 ENSG00000261795 FAM20C ENSG00000240093 LOC100507642
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507642 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507642 Gene

Genomic Locations for LOC100507642 Gene
chr7:149,718-155,465
(GRCh38/hg38)
Size:
5,748 bases
Orientation:
Plus strand

Genomic View for LOC100507642 Gene

Genes around LOC100507642 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507642 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507642 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507642 Gene

Proteins for LOC100507642 Gene

Post-translational modifications for LOC100507642 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507642 Gene

Domains & Families for LOC100507642 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507642 Gene

Function for LOC100507642 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507642 Gene

Localization for LOC100507642 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507642 Gene

Pathways & Interactions for LOC100507642 Gene

PathCards logo

SuperPathways for LOC100507642 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100507642 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507642 Gene

Drugs & Compounds for LOC100507642 Gene

No Compound Related Data Available

Transcripts for LOC100507642 Gene

mRNA/cDNA for LOC100507642 Gene

2 RNACentral transcripts :
2 REFSEQ mRNAs :
5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507642 Gene

No ASD Table

Relevant External Links for LOC100507642 Gene

GeneLoc Exon Structure for
LOC100507642

Expression for LOC100507642 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507642 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507642

SOURCE GeneReport for Unigene cluster for LOC100507642 Gene:

Hs.557780
genes like me logo Genes that share expression patterns with LOC100507642: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507642 Gene

Orthologs for LOC100507642 Gene

No data available for Orthologs and Evolution for LOC100507642 Gene

Paralogs for LOC100507642 Gene

No data available for Paralogs for LOC100507642 Gene

Variants for LOC100507642 Gene

Additional dbSNP identifiers (rs#s) for LOC100507642 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100507642 Gene

Variant ID Type Subtype PubMed ID
dgv1082n67 CNV loss 20364138
dgv11092n54 CNV loss 21841781
dgv1176e199 CNV deletion 23128226
dgv148e203 CNV loss 21179565
dgv1859e212 CNV loss 25503493
dgv232n111 CNV deletion 26073780
dgv419e215 CNV deletion 23714750
dgv6213n100 CNV gain 25217958
dgv6220n100 CNV gain 25217958
esv2421800 CNV deletion 20811451
esv2759498 CNV gain+loss 17122850
esv3571552 CNV loss 25503493
esv3571555 CNV loss 25503493
esv3584858 CNV loss 24956385
esv3611747 CNV gain 21293372
esv3611751 CNV gain 21293372
esv3611754 CNV gain 21293372
esv3611755 CNV loss 21293372
esv3611756 CNV loss 21293372
esv3611757 CNV gain 21293372
esv3891003 CNV loss 25118596
esv3891006 CNV gain 25118596
esv7612 CNV loss 19470904
nsv1017321 CNV gain 25217958
nsv1031868 CNV loss 25217958
nsv1153303 CNV deletion 26484159
nsv1161476 OTHER complex 26073780
nsv428159 CNV gain 18775914
nsv437979 CNV loss 16468122
nsv441791 CNV loss 18776908
nsv464240 CNV gain 19166990
nsv464242 CNV gain 19166990
nsv464243 CNV loss 19166990
nsv471171 CNV gain 18288195
nsv499629 CNV loss 21111241
nsv508440 CNV deletion 20534489
nsv514403 CNV loss 21397061
nsv517159 CNV loss 19592680
nsv523285 CNV loss 19592680
nsv528153 CNV loss 19592680
nsv5610 CNV deletion 18451855
nsv605594 CNV gain 21841781
nsv605597 CNV gain 21841781
nsv605598 CNV loss 21841781
nsv605599 CNV loss 21841781
nsv605600 CNV loss 21841781
nsv605601 CNV loss 21841781
nsv605606 CNV loss 21841781
nsv8026 CNV loss 18304495
nsv823947 CNV gain 20364138
nsv830875 CNV gain 17160897
nsv971190 CNV deletion 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507642 Gene

Disorders for LOC100507642 Gene

No disorders were found for LOC100507642 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507642 Gene

Publications for LOC100507642 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC100507642 Gene

Products for LOC100507642 Gene

Sources for LOC100507642 Gene