Aliases for LOC100507634 Gene

Data sources for LOC100507634 Gene:

RNA type for LOC100507634 Gene

lncRNA

Aliases for LOC100507634 Gene

External Ids for LOC100507634 Gene

Previous GeneCards Identifiers for LOC100507634 Gene

  • GC01P055682
  • GC01P055684

Summaries for LOC100507634 Gene

GeneCards Summary for LOC100507634 Gene

LOC100507634 (Uncharacterized LOC100507634) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507634 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507634 Gene

Genomics for LOC100507634 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507634 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J055210 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.4 -387 8.1 ZNF207 NCOR1 MYC ZNF600 IKZF1 ZNF592 POLR2A CEBPA NFIC ZIC2 USP24 LOC100507634 SSBP3-AS1 RPSAP20 MIR4422HG HSALNG0003822 PCSK9
GH01J055190 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -22.2 -22160 11.2 IKZF1 ZNF600 NCOR1 ATF2 CEBPA NFIC ZIC2 REST CEBPB FOXA1 USP24 MIR4422HG GYG1P3 LOC100507634 HSALNG0003822 PCSK9
GH01J055204 Enhancer 0.9 ENCODE dbSUPER 0.4 -9.9 -9942 0.4 ZNF592 CEBPA ATF3 YY1 CEBPB HOMEZ RXRA RARA JUND FOSL2 USP24 LOC100507634 HSALNG0003822 PCSK9
GH01J055179 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -34.1 -34061 4.2 ZNF654 IKZF1 NCOR1 JUND ZNF580 ZNF592 HES1 ARNT ZNF623 ZNF585B SSBP3-AS1 CYB5RL ENSG00000256407 PARS2 USP24 TTC4 HSALNG0003822 LOC100507634 PCSK9
GH01J055155 Enhancer 0.6 dbSUPER 0.2 -58.9 -58899 1.8 ETS1 THAP11 GABPA ELF1 HCFC1 GABPB1 SPI1 PKNOX1 ZNF143 SIX5 USP24 HSALNG0003822 LOC100507634 PCSK9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507634 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507634 Gene

Latest Assembly
chr1:55,214,961-55,217,461
(GRCh38/hg38)
Size:
2,501 bases
Orientation:
Plus strand

Previous Assembly
chr1:55,681,081-55,683,128
(GRCh37/hg19 by Entrez Gene)
Size:
2,048 bases
Orientation:
Plus strand

Genomic View for LOC100507634 Gene

Genes around LOC100507634 on UCSC Golden Path with GeneCards custom track
LOC100507634 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100507634 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507634 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507634 Gene

Proteins for LOC100507634 Gene

Post-translational modifications for LOC100507634 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507634 Gene

Domains & Families for LOC100507634 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507634 Gene

Function for LOC100507634 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507634 Gene

Localization for LOC100507634 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507634 Gene

Pathways & Interactions for LOC100507634 Gene

PathCards logo

SuperPathways for LOC100507634 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507634 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507634 Gene

Drugs & Compounds for LOC100507634 Gene

No Compound Related Data Available

Transcripts for LOC100507634 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507634 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000759CCB_9606 lncRNA 2048 3

RefSeq: NR_038320,

LNCipedia: lnc-PCSK9-1:2,

NONCODE: NONHSAT003407.2,

URS0001BCBA07_9606 lncRNA 2048 1

LncBook: HSALNT0007120,

URS0000D5A656_9606 lncRNA 1932 1

LNCipedia: lnc-PCSK9-1:4,

URS00008BF127_9606 lncRNA 1806 1

LNCipedia: lnc-PCSK9-1:3,

URS00008B6087_9606 lncRNA 1794 1

LNCipedia: lnc-PCSK9-1:1,

LOC100507634 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507634 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507634 Gene

No ASD Table

Relevant External Links for LOC100507634 Gene

GeneLoc Exon Structure for
LOC100507634

Expression for LOC100507634 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507634 Gene

mRNA expression in normal human tissues for LOC100507634 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507634

SOURCE GeneReport for Unigene cluster for LOC100507634 Gene:

Hs.735428
genes like me logo Genes that share expression patterns with LOC100507634: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507634 Gene

Orthologs for LOC100507634 Gene

No data available for Orthologs and Evolution for LOC100507634 Gene

Paralogs for LOC100507634 Gene

No data available for Paralogs for LOC100507634 Gene

Variants for LOC100507634 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100507634 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100507634 Gene

Variant ID Type Subtype PubMed ID
nsv817614 CNV gain 22305530

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507634 Gene

Disorders for LOC100507634 Gene

No disorders were found for LOC100507634 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507634 Gene

Publications for LOC100507634 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100507634 Gene

Products for LOC100507634 Gene

Sources for LOC100507634 Gene