Aliases for LOC100507599 Gene

Subcategory (RNA class) for LOC100507599 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100507599 Gene

  • Uncharacterized LOC100507599 3
  • Novel Transcript, Antisense To TFIP11 5
  • NONHSAG033584.2 91
  • HSALNG0134644 164
  • CTA-445C9.14 3
  • Lnc-SRRD-1 165
  • Z95115.1 5

External Ids for LOC100507599 Gene

Previous GeneCards Identifiers for LOC100507599 Gene

  • GC22P009855
  • GC22P026908

Summaries for LOC100507599 Gene

GeneCards Summary for LOC100507599 Gene

LOC100507599 (Uncharacterized LOC100507599) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507599 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507599 Gene

Genomics for LOC100507599 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507599 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507599 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507599 Gene

Genomic Locations for LOC100507599 Gene
chr22:26,512,532-26,521,044
(GRCh38/hg38)
Size:
8,513 bases
Orientation:
Plus strand
chr22:26,908,476-26,910,534
(GRCh37/hg19)
Size:
2,059 bases
Orientation:
Plus strand

Genomic View for LOC100507599 Gene

Genes around LOC100507599 on UCSC Golden Path with GeneCards custom track
LOC100507599 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100507599 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507599 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507599 Gene

Proteins for LOC100507599 Gene

Post-translational modifications for LOC100507599 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507599 Gene

Domains & Families for LOC100507599 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507599 Gene

Function for LOC100507599 Gene

Phenotypes From GWAS Catalog for LOC100507599 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507599 Gene

Localization for LOC100507599 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507599 Gene

Pathways & Interactions for LOC100507599 Gene

PathCards logo

SuperPathways for LOC100507599 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507599 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507599 Gene

Drugs & Compounds for LOC100507599 Gene

No Compound Related Data Available

Transcripts for LOC100507599 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507599 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000020CA85_9606 lncRNA 2032 2

Ensembl: ENST00000566814 (view in UCSC) ,

LNCipedia: lnc-SRRD-1:1,

URS00003F197C_9606 lncRNA 981 2

Ensembl: ENST00000565764 (view in UCSC) ,

LNCipedia: lnc-SRRD-1:2,

URS0000A76908_9606 lncRNA 1659 1

RefSeq: NR_144529,

URS00008BFF16_9606 lncRNA 2042 2

LNCipedia: lnc-SRRD-1:3,

NONCODE: NONHSAT084495.2,

URS00008B3C0D_9606 lncRNA 1533 2

LNCipedia: lnc-SRRD-1:4,

NONCODE: NONHSAT084496.2,

LOC100507599 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507599 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507599 Gene

No ASD Table

Relevant External Links for LOC100507599 Gene

GeneLoc Exon Structure for
LOC100507599

Expression for LOC100507599 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507599 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507599

SOURCE GeneReport for Unigene cluster for LOC100507599 Gene:

Hs.405877
genes like me logo Genes that share expression patterns with LOC100507599: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507599 Gene

Orthologs for LOC100507599 Gene

Evolution for LOC100507599 Gene

ENSEMBL:
Gene Tree for LOC100507599 (if available)
TreeFam:
Gene Tree for LOC100507599 (if available)

No data available for Orthologs for LOC100507599 Gene

Paralogs for LOC100507599 Gene

No data available for Paralogs for LOC100507599 Gene

Variants for LOC100507599 Gene

Additional dbSNP identifiers (rs#s) for LOC100507599 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100507599 Gene

Disorders for LOC100507599 Gene

Additional Disease Information for LOC100507599

No disorders were found for LOC100507599 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100507599 Gene

Publications for LOC100507599 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100507599 Gene

Products for LOC100507599 Gene

Sources for LOC100507599 Gene