Aliases for LOC100507564 Gene

Data sources for LOC100507564 Gene:

RNA type for LOC100507564 Gene

lncRNA

Aliases for LOC100507564 Gene

External Ids for LOC100507564 Gene

Previous GeneCards Identifiers for LOC100507564 Gene

  • GC01P053705

Summaries for LOC100507564 Gene

GeneCards Summary for LOC100507564 Gene

LOC100507564 (Uncharacterized LOC100507564) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507564 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507564 Gene

Genomics for LOC100507564 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507564 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507564 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507564 Gene

Latest Assembly
chr1:53,237,699-53,248,539
(GRCh38/hg38)
Size:
10,841 bases
Orientation:
Plus strand

Previous Assembly
chr1:53,704,282-53,708,455
(GRCh37/hg19 by Entrez Gene)
Size:
4,174 bases
Orientation:
Plus strand

chr1:53,704,282-53,708,455
(GRCh37/hg19 by Ensembl)
Size:
4,174 bases
Orientation:
Plus strand

Genomic View for LOC100507564 Gene

Genes around LOC100507564 on UCSC Golden Path with GeneCards custom track
LOC100507564 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100507564 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507564 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507564 Gene

Proteins for LOC100507564 Gene

Post-translational modifications for LOC100507564 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507564 Gene

Domains & Families for LOC100507564 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507564 Gene

Function for LOC100507564 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507564 Gene

Localization for LOC100507564 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507564 Gene

Pathways & Interactions for LOC100507564 Gene

PathCards logo

SuperPathways for LOC100507564 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507564 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507564 Gene

Drugs & Compounds for LOC100507564 Gene

No Compound Related Data Available

Transcripts for LOC100507564 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507564 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000035A3A4_9606 lncRNA 1181 2

RefSeq: NR_038953,

LNCipedia: lnc-CPT2-3:1,

URS0000EEB74C_9606 lncRNA 1649 1

Ensembl: ENST00000655937 (view in UCSC) ,

URS0000EED2FE_9606 lncRNA 1295 1

Ensembl: ENST00000458151 (view in UCSC) ,

URS0000EEEABD_9606 lncRNA 1137 1

Ensembl: ENST00000664677 (view in UCSC) ,

URS00009AE85A_9606 lncRNA 1181 2

LncBook: HSALNT0006903,

NONCODE: NONHSAT148962.1,

LOC100507564 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507564 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507564 Gene

No ASD Table

Relevant External Links for LOC100507564 Gene

GeneLoc Exon Structure for
LOC100507564

Expression for LOC100507564 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507564 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507564

SOURCE GeneReport for Unigene cluster for LOC100507564 Gene:

Hs.592502
genes like me logo Genes that share expression patterns with LOC100507564: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507564 Gene

Orthologs for LOC100507564 Gene

Evolution for LOC100507564 Gene

ENSEMBL:
Gene Tree for LOC100507564 (if available)
TreeFam:
Gene Tree for LOC100507564 (if available)

No data available for Orthologs for LOC100507564 Gene

Paralogs for LOC100507564 Gene

No data available for Paralogs for LOC100507564 Gene

Variants for LOC100507564 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100507564 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100507564 Gene

Variant ID Type Subtype PubMed ID
esv2422213 CNV duplication 17116639
nsv1001535 CNV gain 25217958
nsv1011750 CNV gain 25217958
nsv829871 CNV loss 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507564 Gene

Disorders for LOC100507564 Gene

Additional Disease Information for LOC100507564

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100507564 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100507564 Gene

Publications for LOC100507564 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100507564 Gene

Products for LOC100507564 Gene

Sources for LOC100507564 Gene