Aliases for LOC100507477 Gene

Subcategory (RNA class) for LOC100507477 Gene

lncRNA

Aliases for LOC100507477 Gene

  • Uncharacterized LOC100507477 3

External Ids for LOC100507477 Gene

Previous GeneCards Identifiers for LOC100507477 Gene

  • GC06P140389
  • GC06P140067

Summaries for LOC100507477 Gene

GeneCards Summary for LOC100507477 Gene

LOC100507477 (Uncharacterized LOC100507477) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507477 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507477 Gene

Genomics for LOC100507477 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507477 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J139973 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.9 2850 11.9 CREB1 TEAD4 PRDM10 ZNF629 IKZF1 ZNF692 ZNF174 TARDBP JUND FOXA1 ENSG00000236013 LOC100507477 ENSG00000287820 LOC103352541 CITED2
GH06J139989 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +14.1 14148 2.5 FOXA1 ZNF600 FOXJ2 NFE2 ZNF316 MAFG ZNF335 TRIM28 ENSG00000287820 LOC103352541 LOC100507477 ENSG00000236013 CITED2
GH06J139966 Enhancer 0.7 Ensembl dbSUPER 0.4 -10.5 -10518 2.4 SCRT2 ZBTB44 ZNF316 MAFF MAFK MAFG RAD21 FEZF1 EMSY ENSG00000236013 HSALNG0053897 LOC100507477 ENSG00000287820 CITED2
GH06J139970 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -5.5 -5525 1.2 ZNF133 LOC100507477 HSALNG0053897 ENSG00000287820 CITED2
GH06J140001 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +26.3 26313 3.3 SPI1 RCOR1 RAD21 JUND CHD2 GATA2 ENSG00000236013 LOC103352541 piR-31199-322 LOC100507477 CITED2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507477 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507477 Gene

Genomic Locations for LOC100507477 Gene
chr6:139,976,319-140,093,721
(GRCh38/hg38)
Size:
117,403 bases
Orientation:
Plus strand

Genomic View for LOC100507477 Gene

Genes around LOC100507477 on UCSC Golden Path with GeneCards custom track
LOC100507477 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100507477 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507477 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507477 Gene

Proteins for LOC100507477 Gene

Post-translational modifications for LOC100507477 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507477 Gene

Domains & Families for LOC100507477 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507477 Gene

Function for LOC100507477 Gene

Phenotypes From GWAS Catalog for LOC100507477 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507477 Gene

Localization for LOC100507477 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507477 Gene

Pathways & Interactions for LOC100507477 Gene

PathCards logo

SuperPathways for LOC100507477 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507477 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507477 Gene

Drugs & Compounds for LOC100507477 Gene

No Compound Related Data Available

Transcripts for LOC100507477 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507477 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C637_9606 lncRNA 1364 1

RefSeq: NR_121622,

URS000075A81A_9606 lncRNA 845 1

RefSeq: NR_121623,

LOC100507477 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507477 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507477 Gene

No ASD Table

Relevant External Links for LOC100507477 Gene

GeneLoc Exon Structure for
LOC100507477

Expression for LOC100507477 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507477 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507477

SOURCE GeneReport for Unigene cluster for LOC100507477 Gene:

Hs.179213
genes like me logo Genes that share expression patterns with LOC100507477: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507477 Gene

Orthologs for LOC100507477 Gene

No data available for Orthologs and Evolution for LOC100507477 Gene

Paralogs for LOC100507477 Gene

No data available for Paralogs for LOC100507477 Gene

Variants for LOC100507477 Gene

Additional dbSNP identifiers (rs#s) for LOC100507477 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100507477 Gene

Variant ID Type Subtype PubMed ID
dgv1156e199 CNV deletion 23128226
dgv6153n100 CNV loss 25217958
esv2504654 CNV deletion 19546169
esv2678925 CNV deletion 23128226
esv2732787 CNV deletion 23290073
esv3610986 CNV loss 21293372
esv3610987 CNV loss 21293372
esv3610988 CNV loss 21293372
esv3610990 CNV loss 21293372
esv3610991 CNV loss 21293372
esv3890952 CNV loss 25118596
nsv1161454 CNV deletion 26073780
nsv442010 CNV loss 18776908
nsv514392 CNV loss 21397061
nsv527772 CNV loss 19592680
nsv604765 CNV gain 21841781
nsv823852 CNV loss 20364138
nsv823854 CNV loss 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507477 Gene

Disorders for LOC100507477 Gene

No disorders were found for LOC100507477 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507477 Gene

Publications for LOC100507477 Gene

  1. Construction of a normalized directionally cloned cDNA library from adult heart and analysis of 3040 clones by partial sequencing. (PMID: 8661126) Tanaka T … Nakamura Y (Genomics 1996) 3

No data available for Mastermind for LOC100507477 Gene

Products for LOC100507477 Gene

Sources for LOC100507477 Gene