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Aliases for LOC100507373 Gene

Subcategory (RNA class) for LOC100507373 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100507373 Gene

  • Uncharacterized LOC100507373 3
  • CTB-55O6.12 3

External Ids for LOC100507373 Gene

Previous GeneCards Identifiers for LOC100507373 Gene

  • GC19P014248

Summaries for LOC100507373 Gene

GeneCards Summary for LOC100507373 Gene

LOC100507373 (Uncharacterized LOC100507373) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100507373 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100507373 Gene

Genomics for LOC100507373 Gene

GeneHancer (GH) Regulatory Elements for LOC100507373 Gene

Promoters and enhancers for LOC100507373 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014135 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 600.7 +0.7 660 6 HDGF CC2D1A ZFX SP1 CTCF ELF3 MNT CBFA2T2 NKRF POLR2A ASF1B LOC100507373 ENSG00000267169 DDX39A DCAF15 RFX1 PRKACA CCDC130 PALM3 PIR43598
GH19J014142 Enhancer 0.9 ENCODE 0.4 +5.7 5742 0.1 CC2D1A ZKSCAN8 CBFA2T2 ZNF148 MLLT1 BACH1 TRIM24 ZNF639 EGR1 SMARCA4 LOC100507373 ENSG00000267169 PIR43598 GC19M014160
GH19J014147 Enhancer 0.9 ENCODE dbSUPER 0.4 +12.2 12207 3.3 CC2D1A CTCF PRDM1 RAD21 ZNF512 ZIC2 REST PATZ1 POLR2A MTA2 PRKACA PIR43598 LOC100507373 GC19M014160 ENSG00000267169 ADGRL1
GH19J014146 Enhancer 0.8 ENCODE 0.4 +9.7 9749 0.8 MLLT1 CEBPG IKZF1 ZNF600 CEBPA ZNF7 ATF1 HDAC1 SOX6 MGA LOC100507373 ENSG00000267169 PIR43598 GC19M014160
GH19J014165 Enhancer 0.6 ENCODE 0.3 +30.0 29962 2.8 PRDM1 PRDM10 ZIC2 ZNF692 RUNX3 ZFHX2 ZNF398 RAD21 KLF1 ZNF362 PRKACA GC19P014171 PIR54415 ENSG00000267169 LOC100507373 ADGRL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507373 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507373 Gene

Genomic Locations for LOC100507373 Gene
chr19:14,137,152-14,171,264
(GRCh38/hg38)
Size:
34,113 bases
Orientation:
Plus strand
chr19:14,247,980-14,282,079
(GRCh37/hg19)
Size:
34,100 bases
Orientation:
Plus strand

Genomic View for LOC100507373 Gene

Genes around LOC100507373 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507373 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507373 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507373 Gene

Proteins for LOC100507373 Gene

Post-translational modifications for LOC100507373 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507373 Gene

Domains & Families for LOC100507373 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100507373 Gene

Function for LOC100507373 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507373 Gene

Localization for LOC100507373 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507373 Gene

Pathways & Interactions for LOC100507373 Gene

PathCards logo

SuperPathways for LOC100507373 Gene

No Data Available

Interacting Proteins for LOC100507373 Gene

Gene Ontology (GO) - Biological Process for LOC100507373 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100507373 Gene

Drugs & Compounds for LOC100507373 Gene

No Compound Related Data Available

Transcripts for LOC100507373 Gene

mRNA/cDNA for LOC100507373 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100507373 Gene

Uncharacterized LOC100507373:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507373 Gene

No ASD Table

Relevant External Links for LOC100507373 Gene

GeneLoc Exon Structure for
LOC100507373

Expression for LOC100507373 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100507373 Gene

SOURCE GeneReport for Unigene cluster for LOC100507373 Gene:

Hs.720437
genes like me logo Genes that share expression patterns with LOC100507373: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507373 Gene

Orthologs for LOC100507373 Gene

No data available for Orthologs and Evolution for LOC100507373 Gene

Paralogs for LOC100507373 Gene

No data available for Paralogs for LOC100507373 Gene

Variants for LOC100507373 Gene

Sequence variations from dbSNP and Humsavar for LOC100507373 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1202804312 uncertain-significance, Inborn genetic diseases 14,160,140(+) C/T intron_variant
rs1000019605 -- 14,143,119(+) C/T intron_variant
rs1000082286 -- 14,136,940(+) T/C upstream_transcript_variant
rs1000095606 -- 14,148,310(+) G/A intron_variant
rs1000162009 -- 14,160,523(+) C/G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100507373 Gene

Variant ID Type Subtype PubMed ID
dgv49n68 CNV loss 17160897
nsv1072864 CNV deletion 25765185
nsv2423 CNV insertion 18451855
nsv517436 CNV loss 19592680
nsv578642 CNV gain 21841781
nsv578663 CNV loss 21841781
nsv828452 CNV loss 20364138
nsv953980 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100507373 Gene

Disorders for LOC100507373 Gene

No disorders were found for LOC100507373 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507373 Gene

Publications for LOC100507373 Gene

No publications were found for LOC100507373 Gene.

No data available for External Links for LOC100507373 Gene

Products for LOC100507373 Gene

Sources for LOC100507373 Gene

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