LOC100507351 Gene (RNA Gene)

Uncharacterized LOC100507351

GC17P077547
GIFtS:
9

Aliases for LOC100507351 Gene

Subcategory (RNA class) for LOC100507351 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC100507351 Gene

  • Uncharacterized LOC100507351 3
  • HSALNG0118933 169
  • NONHSAG022859 94
  • Lnc-SEPT9-3 170

External Ids for LOC100507351 Gene

Previous GeneCards Identifiers for LOC100507351 Gene

  • GC17P075544

Summaries for LOC100507351 Gene

GeneCards Summary for LOC100507351 Gene

LOC100507351 (Uncharacterized LOC100507351) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507351 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507351 Gene

Genomics for LOC100507351 Gene

GeneHancer (GH) Regulatory Elements for LOC100507351 Gene

Promoters and enhancers for LOC100507351 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J077546 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas 750.6 +0.2 219 0.9 ZNF121 SP1 ZNF423 WT1 ZNF366 KLF17 CTCF L3MBTL2 KLF1 ENSG00000267506 ENSG00000286534 LOC100507351 ENSG00000267466
GH17J077545 Enhancer 0.3 Ensembl 750.6 -1.9 -1940 0.4 PKNOX1 ENSG00000267506 LOC100507351 RF00017-2564
GH17J077555 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 +9.0 9018 1.7 ZSCAN21 PRDM1 ZIC2 RFX1 ZBTB8A PRDM10 ZSCAN4 POLR2A PATZ1 ZNF692 SRSF2 ENSG00000267506 ENSG00000286534 LOC100507351 piR-32105
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507351 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507351 Gene

Genomic Locations for LOC100507351 Gene
chr17:77,546,941-77,565,024
(GRCh38/hg38)
Size:
18,084 bases
Orientation:
Plus strand
chr17:75,543,022-75,561,106
(GRCh37/hg19)
Size:
18,085 bases
Orientation:
Plus strand

Genomic View for LOC100507351 Gene

Genes around LOC100507351 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507351 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507351 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100507351 Gene

Proteins for LOC100507351 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100507351 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507351 Gene

Domains & Families for LOC100507351 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507351 Gene

Function for LOC100507351 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507351 Gene

Localization for LOC100507351 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507351 Gene

Pathways & Interactions for LOC100507351 Gene

PathCards logo

SuperPathways for LOC100507351 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507351 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100507351 Gene

Drugs & Compounds for LOC100507351 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC100507351 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC100507351 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(15) RNACentral transcripts :
(6) LncBook transcripts :
(14) LNCipedia transcripts :
(8) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507351 Gene

No ASD Table

Relevant External Links for LOC100507351 Gene

GeneLoc Exon Structure for
LOC100507351

Expression for LOC100507351 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100507351 Gene

mRNA expression in normal human tissues for LOC100507351 Gene
mRNA expression by GTEx for LOC100507351 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100507351 Gene

This gene is overexpressed in Prostate (x5.2), Esophagus - Gastroesophageal Junction (x4.5), and Cervix - Endocervix (x4.1).

SOURCE GeneReport for Unigene cluster for LOC100507351 Gene:

Hs.514518
genes like me logo Genes that share expression patterns with LOC100507351: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507351 Gene

Orthologs for LOC100507351 Gene

No data available for Orthologs and Evolution for LOC100507351 Gene

Paralogs for LOC100507351 Gene

No data available for Paralogs for LOC100507351 Gene

Variants for LOC100507351 Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC100507351 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000011769 -- 77,549,365(+) A/G intron_variant
rs1000038473 -- 77,553,097(+) C/T intron_variant
rs1000412825 -- 77,547,996(+) C/G intron_variant
rs1000446555 -- 77,549,622(+) G/A intron_variant
rs1000501887 -- 77,545,835(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100507351 Gene

Variant ID Type Subtype PubMed ID
dgv1514n106 CNV deletion 24896259
dgv3284n100 CNV gain 25217958
esv1104700 CNV insertion 17803354
esv1592741 CNV deletion 17803354
esv2348759 CNV deletion 18987734
esv2671490 CNV deletion 23128226
esv2716282 CNV deletion 23290073
esv2716283 CNV deletion 23290073
esv28404 CNV gain 19812545
esv3432357 CNV duplication 20981092
esv3641315 CNV gain 21293372
nsv1146114 CNV deletion 26484159
nsv510729 CNV deletion 20534489
nsv512505 CNV loss 21212237
nsv833553 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100507351 Gene

Disorders for LOC100507351 Gene

No disorders were found for LOC100507351 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507351 Gene

Publications for LOC100507351 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LOC100507351 Gene

Products for LOC100507351 Gene

Sources for LOC100507351 Gene