Aliases for LOC100507351 Gene

Data sources for LOC100507351 Gene:

Subcategory (RNA class) for LOC100507351 Gene

lncRNA

Aliases for LOC100507351 Gene

External Ids for LOC100507351 Gene

Previous GeneCards Identifiers for LOC100507351 Gene

  • GC17P075544

Summaries for LOC100507351 Gene

GeneCards Summary for LOC100507351 Gene

LOC100507351 (Uncharacterized LOC100507351) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507351 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507351 Gene

Genomics for LOC100507351 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507351 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J077529 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 250.7 +1.3 1336 1.2 ZBTB10 FEZF1 ETS1 ZIC2 CTCF ZNF341 GABPB1 KLF9 YY1 SP2 LOC100507351 SRSF2 METTL23 MFSD11 lnc-TMC6-2 LOC400622 SEPTIN9 TNRC6C
GH17J077527 Promoter 0.6 Ensembl 250.7 -0.3 -264 0.4 YY1 TEAD4 KAT8 HSALNG0118930 LOC100507351 lnc-TMC6-2 LOC400622 SEPTIN9 TNRC6C
GH17J077528 Enhancer 0.2 CraniofacialAtlas 250.7 +0.6 554 0.2 HSALNG0118930 LOC100507351 lnc-TMC6-2 LOC400622 SEPTIN9 TNRC6C
GH17J077541 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.4 +15.5 15536 4.4 ZBTB10 FEZF1 IKZF1 ZNF217 CTCF ZEB1 ZIC2 REST ZNF639 VEZF1 HSALNG0118934 LINC01973 TNRC6C ENSG00000200651 RF00017-2564 LOC100507351 SEPTIN9
GH17J077546 Promoter/Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 +19.6 19595 0.7 CTCF SP1 L3MBTL2 KLF1 ZNF366 ZNF423 KLF17 WT1 ENSG00000267506 ENSG00000286534 ENSG00000267466 LOC100507351 SEPTIN9 TNRC6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507351 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507351 Gene

Latest Assembly
chr17:77,527,465-77,576,916
(GRCh38/hg38)
Size:
49,452 bases
Orientation:
Plus strand

Previous Assembly
chr17:75,543,023-75,561,106
(GRCh37/hg19 by Entrez Gene)
Size:
18,084 bases
Orientation:
Plus strand

Genomic View for LOC100507351 Gene

Genes around LOC100507351 on UCSC Golden Path with GeneCards custom track
LOC100507351 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100507351 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507351 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507351 Gene

Proteins for LOC100507351 Gene

Post-translational modifications for LOC100507351 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507351 Gene

Domains & Families for LOC100507351 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507351 Gene

Function for LOC100507351 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507351 Gene

Localization for LOC100507351 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507351 Gene

Pathways & Interactions for LOC100507351 Gene

PathCards logo

SuperPathways for LOC100507351 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507351 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507351 Gene

Drugs & Compounds for LOC100507351 Gene

No Compound Related Data Available

Transcripts for LOC100507351 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507351 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BEF1_9606 lncRNA 4232 2

RefSeq: NR_040050,

LNCipedia: lnc-SEPT9-3:16,

URS00008BBF88_9606 lncRNA 4231 3

LncBook: HSALNT0245631,

LNCipedia: lnc-SEPT9-3:9,

NONCODE: NONHSAT056161.2,

URS00008B6E36_9606 lncRNA 356 3

LncBook: HSALNT0245618,

LNCipedia: lnc-SEPT9-3:8,

NONCODE: NONHSAT056155.2,

URS00008BB19A_9606 lncRNA 295 3

LncBook: HSALNT0245642,

LNCipedia: lnc-SEPT9-3:7,

NONCODE: NONHSAT056166.2,

URS00008B409F_9606 lncRNA 8111 2

LNCipedia: lnc-SEPT9-3:2,

NONCODE: NONHSAT056162.2,

LOC100507351 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507351 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507351 Gene

No ASD Table

Relevant External Links for LOC100507351 Gene

GeneLoc Exon Structure for
LOC100507351

Expression for LOC100507351 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507351 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100507351 Gene

This gene is overexpressed in Prostate (x5.2), Esophagus - Gastroesophageal Junction (x4.5), and Cervix - Endocervix (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507351

SOURCE GeneReport for Unigene cluster for LOC100507351 Gene:

Hs.514518
genes like me logo Genes that share expression patterns with LOC100507351: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507351 Gene

Orthologs for LOC100507351 Gene

No data available for Orthologs and Evolution for LOC100507351 Gene

Paralogs for LOC100507351 Gene

No data available for Paralogs for LOC100507351 Gene

Variants for LOC100507351 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100507351 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100507351 Gene

Variant ID Type Subtype PubMed ID
dgv1514n106 CNV deletion 24896259
dgv3284n100 CNV gain 25217958
esv1104700 CNV insertion 17803354
esv1592741 CNV deletion 17803354
esv2348759 CNV deletion 18987734
esv2671490 CNV deletion 23128226
esv2716282 CNV deletion 23290073
esv2716283 CNV deletion 23290073
esv28404 CNV gain 19812545
esv3432357 CNV duplication 20981092
esv3641315 CNV gain 21293372
nsv1146114 CNV deletion 26484159
nsv510729 CNV deletion 20534489
nsv512505 CNV loss 21212237
nsv833553 CNV gain 17160897

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507351 Gene

Disorders for LOC100507351 Gene

No disorders were found for LOC100507351 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507351 Gene

Publications for LOC100507351 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100507351 Gene

Products for LOC100507351 Gene

Sources for LOC100507351 Gene