LOC100507283 Gene (RNA Gene)

Uncharacterized LOC100507283

GC11P124800
GIFtS:
10
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Aliases for LOC100507283 Gene

Subcategory (RNA class) for LOC100507283 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100507283 Gene

  • Uncharacterized LOC100507283 3
  • Novel Transcript, Antisense To C11orf61 5
  • NONHSAG009942.2 91
  • HSALNG0087917 164
  • Lnc-ROBO3-2 165
  • AP000866.1 5

External Ids for LOC100507283 Gene

Previous GeneCards Identifiers for LOC100507283 Gene

  • GC11P124671

Summaries for LOC100507283 Gene

GeneCards Summary for LOC100507283 Gene

LOC100507283 (Uncharacterized LOC100507283) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507283 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507283 Gene

Genomics for LOC100507283 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100507283 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507283 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507283 Gene

Genomic Locations for LOC100507283 Gene
chr11:124,800,405-124,834,487
(GRCh38/hg38)
Size:
34,083 bases
Orientation:
Plus strand
chr11:124,670,332-124,704,383
(GRCh37/hg19)
Size:
34,052 bases
Orientation:
Plus strand

Genomic View for LOC100507283 Gene

Genes around LOC100507283 on UCSC Golden Path with GeneCards custom track
LOC100507283 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100507283 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507283 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100507283 Gene

Proteins for LOC100507283 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100507283 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507283 Gene

Domains & Families for LOC100507283 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507283 Gene

Function for LOC100507283 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100507283 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507283 Gene

Localization for LOC100507283 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507283 Gene

Pathways & Interactions for LOC100507283 Gene

PathCards logo

SuperPathways for LOC100507283 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507283 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507283 Gene

Drugs & Compounds for LOC100507283 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC100507283 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507283 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000759BD3_9606 lncRNA 2908 4

RefSeq: NR_103862,

LncBook: HSALNT0182747,

LNCipedia: lnc-ROBO3-2:4,

NONCODE: NONHSAT024902.2,

URS000041AB02_9606 lncRNA 2792 3

Ensembl: ENST00000529392 (view in UCSC) ,

LNCipedia: lnc-ROBO3-2:2,

NONCODE: NONHSAT024904.2,

URS00000B88C5_9606 lncRNA 2886 2

Ensembl: ENST00000499143 (view in UCSC) ,

LNCipedia: lnc-ROBO3-2:1,

URS0000EF3B94_9606 lncRNA 4893 1

Ensembl: ENST00000666933 (view in UCSC) ,

URS0000EF1BDB_9606 lncRNA 3510 1

Ensembl: ENST00000664095 (view in UCSC) ,

LOC100507283 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507283 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507283 Gene

No ASD Table

Relevant External Links for LOC100507283 Gene

GeneLoc Exon Structure for
LOC100507283

Expression for LOC100507283 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507283 Gene

mRNA expression in normal human tissues for LOC100507283 Gene
mRNA expression by GTEx for LOC100507283 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507283

SOURCE GeneReport for Unigene cluster for LOC100507283 Gene:

Hs.564177
genes like me logo Genes that share expression patterns with LOC100507283: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507283 Gene

Orthologs for LOC100507283 Gene

Evolution for LOC100507283 Gene

ENSEMBL:
Gene Tree for LOC100507283 (if available)
TreeFam:
Gene Tree for LOC100507283 (if available)

No data available for Orthologs for LOC100507283 Gene

Paralogs for LOC100507283 Gene

No data available for Paralogs for LOC100507283 Gene

Variants for LOC100507283 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC100507283 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100507283 Gene

Variant ID Type Subtype PubMed ID
esv2657357 CNV deletion 23128226
esv2745187 CNV deletion 23290073
esv3627989 CNV loss 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507283 Gene

Disorders for LOC100507283 Gene

No disorders were found for LOC100507283 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507283 Gene

Publications for LOC100507283 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100507283 Gene

Products for LOC100507283 Gene

Sources for LOC100507283 Gene