Aliases for LOC100507250 Gene

Subcategory (RNA class) for LOC100507250 Gene

lncRNA

Aliases for LOC100507250 Gene

  • Uncharacterized LOC100507250 3

External Ids for LOC100507250 Gene

Previous GeneCards Identifiers for LOC100507250 Gene

  • GC12M066118
  • GC12M069069

Summaries for LOC100507250 Gene

GeneCards Summary for LOC100507250 Gene

LOC100507250 (Uncharacterized LOC100507250) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507250 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507250 Gene

Genomics for LOC100507250 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507250 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J068685 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -0.2 -196 3.5 SP1 CREB1 GATAD2A TEAD4 PRDM10 REST ZNF629 SIX5 LEF1 IKZF1 NUP107 ENSG00000247363 LOC100507250 CPSF6 RPL7P42 lnc-NUP107-1 SLC35E3 lnc-NUP107-26
GH12J068674 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +10.8 10795 2.3 ZNF629 ZNF512 LEF1 IKZF1 JUND PRDM1 MTA2 PKNOX1 MTA1 PATZ1 CPSF6 C1GALT1P1 MDM1 MDM2 NUP107 RAP1B SLC35E3 RPL7P42 lnc-NUP107-1 LOC100507250
GH12J068673 Enhancer 0.7 ENCODE dbSUPER 0.4 +12.8 12767 0.6 DDX20 NR2C1 SCRT2 NCOR1 NR2F6 HDAC2 ETV1 CBFA2T3 ARID1B SMARCA4 RAP1B LOC100507250 NUP107 ENSG00000247363 RPL7P42 lnc-NUP107-1 lnc-CPM-3 lnc-NUP107-26
GH12J068683 Enhancer 0.2 Ensembl 0.7 +2.9 2858 1.2 RPL7P42 lnc-NUP107-1 NUP107 ENSG00000247363 LOC100507250 lnc-CPM-3 RAP1B lnc-NUP107-26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507250 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507250 Gene

Genomic Locations for LOC100507250 Gene
chr12:68,674,371-68,686,859
(GRCh38/hg38)
Size:
12,489 bases
Orientation:
Minus strand

Genomic View for LOC100507250 Gene

Genes around LOC100507250 on UCSC Golden Path with GeneCards custom track
LOC100507250 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100507250 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507250 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507250 Gene

Proteins for LOC100507250 Gene

Post-translational modifications for LOC100507250 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507250 Gene

Domains & Families for LOC100507250 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507250 Gene

Function for LOC100507250 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507250 Gene

Localization for LOC100507250 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507250 Gene

Pathways & Interactions for LOC100507250 Gene

PathCards logo

SuperPathways for LOC100507250 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507250 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507250 Gene

Drugs & Compounds for LOC100507250 Gene

No Compound Related Data Available

Transcripts for LOC100507250 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507250 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A97B_9606 lncRNA 1729 1

RefSeq: NR_038930,

LOC100507250 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507250 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507250 Gene

No ASD Table

Relevant External Links for LOC100507250 Gene

GeneLoc Exon Structure for
LOC100507250

Expression for LOC100507250 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507250 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507250

SOURCE GeneReport for Unigene cluster for LOC100507250 Gene:

Hs.600731
genes like me logo Genes that share expression patterns with LOC100507250: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507250 Gene

Orthologs for LOC100507250 Gene

No data available for Orthologs and Evolution for LOC100507250 Gene

Paralogs for LOC100507250 Gene

No data available for Paralogs for LOC100507250 Gene

Variants for LOC100507250 Gene

Additional dbSNP identifiers (rs#s) for LOC100507250 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100507250 Gene

Variant ID Type Subtype PubMed ID
nsv1070536 CNV deletion 25765185
nsv522941 CNV gain 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507250 Gene

Disorders for LOC100507250 Gene

No disorders were found for LOC100507250 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507250 Gene

Publications for LOC100507250 Gene

No publications were found for LOC100507250 Gene.

No data available for Mastermind for LOC100507250 Gene

Products for LOC100507250 Gene

Sources for LOC100507250 Gene