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Aliases for LOC100507071 Gene

Subcategory (RNA class) for LOC100507071 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100507071 Gene

  • Uncharacterized LOC100507071 3
  • CTD-2530N21.4 3

External Ids for LOC100507071 Gene

Previous GeneCards Identifiers for LOC100507071 Gene

  • GC08M022112

Summaries for LOC100507071 Gene

GeneCards Summary for LOC100507071 Gene

LOC100507071 (Uncharacterized LOC100507071) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100507071 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100507071 Gene

Genomics for LOC100507071 Gene

GeneHancer (GH) Regulatory Elements for LOC100507071 Gene

Promoters and enhancers for LOC100507071 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J022275 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 600.7 -0.4 -367 1.6 SP1 PKNOX1 POLR2A NFYC PIWIL2 ENSG00000254064 LOC100507071 SLC39A14
GH08J022276 Promoter 1.2 Ensembl 600.7 +1.1 1132 0.2 ELF3 CEBPG RERE MAFK TFE3 SP1 KAT8 HMG20B RXRA CEBPA ENSG00000254064 PIWIL2 LOC100507071 GC08P022247 GC08P022245
GH08J022274 Enhancer 0.9 ENCODE 600.7 +0.9 870 0.2 ELF3 CEBPG RERE MAFK TFE3 SP1 KAT8 HMG20B RXRA CEBPA ENSG00000254064 PIWIL2 LOC100507071 GC08P022247 GC08P022245
GH08J022271 Enhancer 0.4 Ensembl ENCODE 0.7 +3.7 3733 0.6 PIWIL2 LOC100507071 ENSG00000254064 GC08P022247 GC08P022245
GH08J022254 Enhancer 0.6 Ensembl ENCODE 0.4 +19.7 19716 1.6 ZNF600 POLR2A SUPT5H PIWIL2 SLC39A14 POLR3D GC08P022247 GC08P022245 LOC100507071 ENSG00000254064
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507071 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507071 Gene

Genomic Locations for LOC100507071 Gene
chr8:22,254,576-22,275,233
(GRCh38/hg38)
Size:
20,658 bases
Orientation:
Minus strand
chr8:22,112,089-22,132,675
(GRCh37/hg19)
Size:
20,587 bases
Orientation:
Minus strand

Genomic View for LOC100507071 Gene

Genes around LOC100507071 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507071 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507071 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507071 Gene

Proteins for LOC100507071 Gene

Post-translational modifications for LOC100507071 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507071 Gene

Domains & Families for LOC100507071 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100507071 Gene

Function for LOC100507071 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507071 Gene

Localization for LOC100507071 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507071 Gene

Pathways & Interactions for LOC100507071 Gene

PathCards logo

SuperPathways for LOC100507071 Gene

No Data Available

Interacting Proteins for LOC100507071 Gene

Gene Ontology (GO) - Biological Process for LOC100507071 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100507071 Gene

Drugs & Compounds for LOC100507071 Gene

No Compound Related Data Available

Transcripts for LOC100507071 Gene

mRNA/cDNA for LOC100507071 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100507071 Gene

Uncharacterized LOC100507071:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507071 Gene

No ASD Table

Relevant External Links for LOC100507071 Gene

GeneLoc Exon Structure for
LOC100507071

Expression for LOC100507071 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100507071 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100507071 Gene

This gene is overexpressed in Testis (x4.7).

SOURCE GeneReport for Unigene cluster for LOC100507071 Gene:

Hs.458623
genes like me logo Genes that share expression patterns with LOC100507071: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507071 Gene

Orthologs for LOC100507071 Gene

No data available for Orthologs and Evolution for LOC100507071 Gene

Paralogs for LOC100507071 Gene

No data available for Paralogs for LOC100507071 Gene

Variants for LOC100507071 Gene

Sequence variations from dbSNP and Humsavar for LOC100507071 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000020345 -- 22,273,462(-) C/T intron_variant
rs1000033930 -- 22,266,763(-) G/A intron_variant
rs1000072614 -- 22,273,108(-) G/A intron_variant
rs1000097886 -- 22,254,427(-) T/G downstream_transcript_variant
rs1000584574 -- 22,273,413(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100507071 Gene

Disorders for LOC100507071 Gene

No disorders were found for LOC100507071 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507071 Gene

Publications for LOC100507071 Gene

No publications were found for LOC100507071 Gene.

No data available for External Links for LOC100507071 Gene

Products for LOC100507071 Gene

Sources for LOC100507071 Gene

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