Aliases for LOC100507071 Gene

Subcategory (RNA class) for LOC100507071 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100507071 Gene

  • Uncharacterized LOC100507071 3
  • Novel Transcript 5
  • NONHSAG049718.2 91
  • CTD-2530N21.4 3
  • Lnc-PHYHIP-1 165
  • AC105206.2 5

External Ids for LOC100507071 Gene

Previous GeneCards Identifiers for LOC100507071 Gene

  • GC08M022112
  • GC08M022254

Summaries for LOC100507071 Gene

GeneCards Summary for LOC100507071 Gene

LOC100507071 (Uncharacterized LOC100507071) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507071 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507071 Gene

Genomics for LOC100507071 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507071 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507071 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507071 Gene

Genomic Locations for LOC100507071 Gene
chr8:22,252,509-22,275,173
(GRCh38/hg38)
Size:
22,665 bases
Orientation:
Minus strand
chr8:22,112,089-22,132,675
(GRCh37/hg19)
Size:
20,587 bases
Orientation:
Minus strand

Genomic View for LOC100507071 Gene

Genes around LOC100507071 on UCSC Golden Path with GeneCards custom track
LOC100507071 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100507071 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507071 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507071 Gene

Proteins for LOC100507071 Gene

Post-translational modifications for LOC100507071 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507071 Gene

Domains & Families for LOC100507071 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507071 Gene

Function for LOC100507071 Gene

Phenotypes From GWAS Catalog for LOC100507071 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507071 Gene

Localization for LOC100507071 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507071 Gene

Pathways & Interactions for LOC100507071 Gene

PathCards logo

SuperPathways for LOC100507071 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507071 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507071 Gene

Drugs & Compounds for LOC100507071 Gene

No Compound Related Data Available

Transcripts for LOC100507071 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507071 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000F88AE_9606 lncRNA 515 2

Ensembl: ENST00000523556 (view in UCSC) ,

LNCipedia: lnc-PHYHIP-1:1,

URS0000A76CDB_9606 lncRNA 515 1

RefSeq: NR_134293,

URS00008BE576_9606 lncRNA 2593 2

LNCipedia: lnc-PHYHIP-1:2,

NONCODE: NONHSAT125473.2,

LOC100507071 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507071 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507071 Gene

No ASD Table

Relevant External Links for LOC100507071 Gene

GeneLoc Exon Structure for
LOC100507071

Expression for LOC100507071 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507071 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100507071 Gene

This gene is overexpressed in Testis (x4.7).

SOURCE GeneReport for Unigene cluster for LOC100507071 Gene:

Hs.458623
genes like me logo Genes that share expression patterns with LOC100507071: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507071 Gene

Orthologs for LOC100507071 Gene

Evolution for LOC100507071 Gene

ENSEMBL:
Gene Tree for LOC100507071 (if available)
TreeFam:
Gene Tree for LOC100507071 (if available)

No data available for Orthologs for LOC100507071 Gene

Paralogs for LOC100507071 Gene

No data available for Paralogs for LOC100507071 Gene

Variants for LOC100507071 Gene

Additional dbSNP identifiers (rs#s) for LOC100507071 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100507071 Gene

Disorders for LOC100507071 Gene

Additional Disease Information for LOC100507071

No disorders were found for LOC100507071 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100507071 Gene

Publications for LOC100507071 Gene

No publications were found for LOC100507071 Gene.

No data available for Mastermind for LOC100507071 Gene

Products for LOC100507071 Gene

Sources for LOC100507071 Gene