Aliases for LOC100507065 Gene

Subcategory (RNA class) for LOC100507065 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100507065 Gene

  • Uncharacterized LOC100507065 3
  • Novel Transcript 5
  • HSALNG0091985 167
  • NONHSAG011555 92
  • AC025419.1 5
  • Lnc-WIF1-6 168

External Ids for LOC100507065 Gene

Previous GeneCards Identifiers for LOC100507065 Gene

  • GC12M065860

Summaries for LOC100507065 Gene

GeneCards Summary for LOC100507065 Gene

LOC100507065 (Uncharacterized LOC100507065) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507065 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507065 Gene

Genomics for LOC100507065 Gene

GeneHancer (GH) Regulatory Elements for LOC100507065 Gene

Promoters and enhancers for LOC100507065 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J065629 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.9 8867 16.4 ZNF217 ZSCAN5C TCF12 JUND FOS ZNF639 ZNF10 ZIC2 REST POLR2A LEMD3 LINC02454 HMGA2 lnc-LLPH-8 LOC100507065 PCNPP3 ENSG00000256915 LOC105369806
GH12J065601 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +42.3 42254 5.3 CTCF ZSCAN5C TCF12 JUND ZNF639 ZNF10 ZIC2 FOXA1 ZNF423 REST LEMD3 LINC02454 HMGA2 ENSG00000256915 LOC100507065
GH12J065613 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +31.6 31606 2.7 NCOR1 SKI TEAD1 FOXA2 JUND SCRT1 MLLT1 NFIL3 LARP7 NR3C1 RBMS1P1 LINC02454 ENSG00000256915 LOC100507065
GH12J065618 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +26.8 26761 1.8 USF1 USF2 ZFP36 RAD51 POLR2A FOXA1 ENSG00000256915 LOC100507065 LINC02454
GH12J065607 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.3 +36.2 36175 6.4 ZNF217 GATAD2B CTBP1 CTCF FOS USF1 GATA3 FOXA1 JUND DPF2 LINC02454 ENSG00000256915 LOC100507065
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507065 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507065 Gene

Genomic Locations for LOC100507065 Gene
chr12:65,466,817-65,646,462
(GRCh38/hg38)
Size:
179,646 bases
Orientation:
Minus strand
chr12:65,860,600-66,036,152
(GRCh37/hg19)
Size:
175,553 bases
Orientation:
Minus strand

Genomic View for LOC100507065 Gene

Genes around LOC100507065 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507065 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507065 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507065 Gene

Proteins for LOC100507065 Gene

Post-translational modifications for LOC100507065 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507065 Gene

Domains & Families for LOC100507065 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507065 Gene

Function for LOC100507065 Gene

Phenotypes From GWAS Catalog for LOC100507065 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507065 Gene

Localization for LOC100507065 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507065 Gene

Pathways & Interactions for LOC100507065 Gene

PathCards logo

SuperPathways for LOC100507065 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100507065 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507065 Gene

Drugs & Compounds for LOC100507065 Gene

No Compound Related Data Available

Transcripts for LOC100507065 Gene

mRNA/cDNA for LOC100507065 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507065 Gene

No ASD Table

Relevant External Links for LOC100507065 Gene

GeneLoc Exon Structure for
LOC100507065

Expression for LOC100507065 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507065 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507065

SOURCE GeneReport for Unigene cluster for LOC100507065 Gene:

Hs.591038
genes like me logo Genes that share expression patterns with LOC100507065: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507065 Gene

Orthologs for LOC100507065 Gene

Evolution for LOC100507065 Gene

ENSEMBL:
Gene Tree for LOC100507065 (if available)
TreeFam:
Gene Tree for LOC100507065 (if available)

No data available for Orthologs for LOC100507065 Gene

Paralogs for LOC100507065 Gene

No data available for Paralogs for LOC100507065 Gene

Variants for LOC100507065 Gene

Additional dbSNP identifiers (rs#s) for LOC100507065 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100507065 Gene

Variant ID Type Subtype PubMed ID
esv23857 CNV loss 19812545
esv3629790 CNV loss 21293372
nsv1151964 CNV duplication 26484159
nsv510300 OTHER sequence alteration 20534489
nsv750 CNV deletion 18451855
nsv751 CNV insertion 18451855
nsv752 CNV deletion 18451855
nsv753 CNV deletion 18451855
nsv826405 CNV loss 20364138
nsv826406 CNV loss 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507065 Gene

Disorders for LOC100507065 Gene

No disorders were found for LOC100507065 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507065 Gene

Publications for LOC100507065 Gene

  1. LncRNA ENST00000539653 acts as an oncogenic factor via MAPK signalling in papillary thyroid cancer. (PMID: 30940124) Song B … Hou D (BMC cancer 2019) 3 54
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54

No data available for Mastermind for LOC100507065 Gene

Products for LOC100507065 Gene

Sources for LOC100507065 Gene