Aliases for LOC100507006 Gene

Data sources for LOC100507006 Gene:

Subcategory (RNA class) for LOC100507006 Gene

lncRNA

Aliases for LOC100507006 Gene

External Ids for LOC100507006 Gene

Previous GeneCards Identifiers for LOC100507006 Gene

  • GC02P064455
  • GC02P064371
  • GC02P064228

Summaries for LOC100507006 Gene

GeneCards Summary for LOC100507006 Gene

LOC100507006 (Uncharacterized LOC100507006) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507006 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507006 Gene

Genomics for LOC100507006 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100507006 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507006 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507006 Gene

Latest Assembly
chr2:64,143,238-64,252,860
(GRCh38/hg38)
Size:
109,623 bases
Orientation:
Plus strand

Previous Assembly
chr2:64,455,535-64,479,665
(GRCh37/hg19 by Entrez Gene)
Size:
24,131 bases
Orientation:
Plus strand

Genomic View for LOC100507006 Gene

Genes around LOC100507006 on UCSC Golden Path with GeneCards custom track
LOC100507006 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100507006 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507006 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507006 Gene

Proteins for LOC100507006 Gene

Post-translational modifications for LOC100507006 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507006 Gene

Domains & Families for LOC100507006 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507006 Gene

Function for LOC100507006 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507006 Gene

Localization for LOC100507006 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507006 Gene

Pathways & Interactions for LOC100507006 Gene

PathCards logo

SuperPathways for LOC100507006 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507006 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507006 Gene

Drugs & Compounds for LOC100507006 Gene

No Compound Related Data Available

Transcripts for LOC100507006 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507006 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D404_9606 lncRNA 785 3

RefSeq: NR_120420,

LNCipedia: lnc-LGALSL-2:10,

NONCODE: NONHSAT181890.1,

URS00008B472E_9606 lncRNA 609 3

LncBook: HSALNT0032640,

LNCipedia: lnc-LGALSL-2:9,

NONCODE: NONHSAT071103.2,

URS00008B2266_9606 lncRNA 527 3

LncBook: HSALNT0032631,

LNCipedia: lnc-LGALSL-2:8,

NONCODE: NONHSAT071099.2,

URS00008B8806_9606 lncRNA 511 3

LncBook: HSALNT0032618,

LNCipedia: lnc-LGALSL-2:1,

NONCODE: NONHSAT071091.2,

URS00009C16A5_9606 lncRNA 2487 2

LncBook: HSALNT0032621,

NONCODE: NONHSAT181889.1,

LOC100507006 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507006 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507006 Gene

No ASD Table

Relevant External Links for LOC100507006 Gene

GeneLoc Exon Structure for
LOC100507006

Expression for LOC100507006 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507006 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507006

SOURCE GeneReport for Unigene cluster for LOC100507006 Gene:

Hs.442789
genes like me logo Genes that share expression patterns with LOC100507006: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507006 Gene

Orthologs for LOC100507006 Gene

No data available for Orthologs and Evolution for LOC100507006 Gene

Paralogs for LOC100507006 Gene

No data available for Paralogs for LOC100507006 Gene

Variants for LOC100507006 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100507006 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100507006 Gene

Variant ID Type Subtype PubMed ID
dgv151e55 CNV gain 17911159
dgv3861n100 CNV gain 25217958
dgv705e214 CNV gain 21293372
esv1010948 CNV deletion 20482838
esv2670157 CNV deletion 23128226
esv2759055 CNV gain 17122850
esv29437 CNV gain 19812545
esv3302963 CNV tandem duplication 20981092
esv3557755 CNV deletion 23714750
esv3591077 CNV loss 21293372
nsv1006553 CNV gain 25217958
nsv1013132 CNV loss 25217958
nsv428396 CNV gain 18775914
nsv435714 CNV deletion 17901297
nsv508146 CNV deletion 20534489
nsv582126 CNV gain 21841781
nsv582127 CNV gain 21841781
nsv7313 OTHER inversion 18451855
nsv834243 CNV gain+loss 17160897
nsv9957 CNV gain 18304495

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507006 Gene

Disorders for LOC100507006 Gene

No disorders were found for LOC100507006 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507006 Gene

Publications for LOC100507006 Gene

  1. lncRNA NR_120420 promotes SH-SY5Y cells apoptosis by regulating NF-κB after oxygen and glucose deprivation. (PMID: 31838253) Tian C … Hong B (Gene 2020) 3

No data available for Mastermind for LOC100507006 Gene

Products for LOC100507006 Gene

Sources for LOC100507006 Gene