Aliases for LOC100507006 Gene

Subcategory (RNA class) for LOC100507006 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100507006 Gene

  • Uncharacterized LOC100507006 3
  • NONHSAG027951 92
  • HSALNG0015452 167
  • Lnc-LGALSL-2 168

External Ids for LOC100507006 Gene

Previous GeneCards Identifiers for LOC100507006 Gene

  • GC02P064455
  • GC02P064371
  • GC02P064143

Summaries for LOC100507006 Gene

GeneCards Summary for LOC100507006 Gene

LOC100507006 (Uncharacterized LOC100507006) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507006 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507006 Gene

Genomics for LOC100507006 Gene

GeneHancer (GH) Regulatory Elements for LOC100507006 Gene

Promoters and enhancers for LOC100507006 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J064227 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -0.1 -80 2.1 SIN3A NRF1 USF1 ZBTB26 TRIM28 MYC SKI POLR2A HDAC2 MXI1 LOC100507006 VPS54 ENSG00000225889 piR-50444-248 lnc-PELI1-8
GH02J064250 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +23.5 23536 3.5 PHB2 ZNF623 RFX1 HDAC2 RBM25 POLR2A NCOR1 ZNF316 NFIC ARNT lnc-PELI1-8 piR-48950-088 ENSG00000225889 UGP2 LOC100507006
GH02J064242 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +17.4 17443 5.9 FOXA2 NR2F2 FOS ZBTB33 JUND ZNF146 RAD21 RXRA MAX HNF4A ENSG00000225889 PELI1 UGP2 AFTPH SERTAD2 lnc-PELI1-8 LOC100507006
GH02J064221 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 0.4 -6.1 -6125 2.8 EP300 KAT2B SMARCA4 ZNF24 ZNF687 POLR2A PELI1 ENSG00000225889 SERTAD2 AFTPH piR-50444-248 LOC100507006 lnc-PELI1-8
GH02J064220 Enhancer 0.6 FANTOM5 dbSUPER 0.4 -8.0 -7960 0.3 SPI1 ZNF3 ETV6 piR-50444-248 PELI1 SERTAD2 AFTPH LOC100507006 lnc-PELI1-8 ENSG00000225889
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507006 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100507006 Gene

Genomic Locations for LOC100507006 Gene
chr2:64,228,401-64,252,531
(GRCh38/hg38)
Size:
24,131 bases
Orientation:
Plus strand

Genomic View for LOC100507006 Gene

Genes around LOC100507006 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100507006 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507006 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100507006 Gene

Proteins for LOC100507006 Gene

Post-translational modifications for LOC100507006 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507006 Gene

Domains & Families for LOC100507006 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507006 Gene

Function for LOC100507006 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507006 Gene

Localization for LOC100507006 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507006 Gene

Pathways & Interactions for LOC100507006 Gene

PathCards logo

SuperPathways for LOC100507006 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100507006 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507006 Gene

Drugs & Compounds for LOC100507006 Gene

No Compound Related Data Available

Transcripts for LOC100507006 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507006 Gene

No ASD Table

Relevant External Links for LOC100507006 Gene

GeneLoc Exon Structure for
LOC100507006

Expression for LOC100507006 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507006 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507006

SOURCE GeneReport for Unigene cluster for LOC100507006 Gene:

Hs.442789
genes like me logo Genes that share expression patterns with LOC100507006: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507006 Gene

Orthologs for LOC100507006 Gene

No data available for Orthologs and Evolution for LOC100507006 Gene

Paralogs for LOC100507006 Gene

No data available for Paralogs for LOC100507006 Gene

Variants for LOC100507006 Gene

Additional dbSNP identifiers (rs#s) for LOC100507006 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100507006 Gene

Variant ID Type Subtype PubMed ID
dgv151e55 CNV gain 17911159
dgv3861n100 CNV gain 25217958
dgv705e214 CNV gain 21293372
esv1010948 CNV deletion 20482838
esv2670157 CNV deletion 23128226
esv2759055 CNV gain 17122850
esv29437 CNV gain 19812545
esv3302963 CNV tandem duplication 20981092
esv3557755 CNV deletion 23714750
esv3591077 CNV loss 21293372
nsv1006553 CNV gain 25217958
nsv1013132 CNV loss 25217958
nsv428396 CNV gain 18775914
nsv435714 CNV deletion 17901297
nsv508146 CNV deletion 20534489
nsv582126 CNV gain 21841781
nsv582127 CNV gain 21841781
nsv7313 OTHER inversion 18451855
nsv834243 CNV gain+loss 17160897
nsv9957 CNV gain 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507006 Gene

Disorders for LOC100507006 Gene

No disorders were found for LOC100507006 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507006 Gene

Publications for LOC100507006 Gene

  1. lncRNA NR_120420 promotes SH-SY5Y cells apoptosis by regulating NF-κB after oxygen and glucose deprivation. (PMID: 31838253) Tian C … Hong B (Gene 2020) 3

No data available for Mastermind for LOC100507006 Gene

Products for LOC100507006 Gene

Sources for LOC100507006 Gene