LOC100507006 Gene (RNA Gene)

Uncharacterized LOC100507006

GC02P064143
GIFtS:
9
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Aliases for LOC100507006 Gene

Subcategory (RNA class) for LOC100507006 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100507006 Gene

  • Uncharacterized LOC100507006 3
  • NONHSAG027951.2 91
  • HSALNG0015452 164
  • Lnc-LGALSL-2 165

External Ids for LOC100507006 Gene

Previous GeneCards Identifiers for LOC100507006 Gene

  • GC02P064455
  • GC02P064371
  • GC02P064228

Summaries for LOC100507006 Gene

GeneCards Summary for LOC100507006 Gene

LOC100507006 (Uncharacterized LOC100507006) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100507006 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100507006 Gene

Genomics for LOC100507006 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100507006 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J064140 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 563 6.8 SP1 HNRNPL CREB1 PRDM10 RFX1 SIX5 LEF1 IKZF1 KDM1A ZNF692 ENSG00000225889 LOC100507006 PELI1 lnc-VPS54-4 VPS54 MDH1 UGP2 WDPCP
GH02J064137 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -5.3 -5285 0.9 JUND IKZF2 HDAC1 ZNF600 CTBP1 ZSCAN5C OSR2 MNT ZNF217 RBM22 ENSG00000225889 LOC100507006 PELI1 lnc-VPS54-4 lnc-UGP2-3-002 VPS54
GH02J064200 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +59.9 59858 5.2 RFX1 ZNF143 RELA SMAD5 IKZF2 TRIM22 POLR2A GABPA YY1 FOXJ2 LINC00309 ENSG00000225889 PELI1 ENSG00000237217 LGALSL LGALSL-DT VPS54 lnc-PELI1-6 LOC100507006
GH02J064141 Promoter/Enhancer 0.6 Ensembl dbSUPER 0.7 -3.1 -3138 0.2 CHD1 ENSG00000225889 LOC100507006 PELI1 lnc-VPS54-4 lnc-UGP2-3-002 VPS54
GH02J064157 Enhancer 0.9 Ensembl ENCODE 0.4 +14.8 14762 0.4 GATAD2A REST SP1 CEBPA CEBPB ESR1 ATF3 YY1 ZBTB33 TEAD1 LOC100507006 ENSG00000225889 PELI1 HSALNG0015453 LGALSL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100507006 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100507006 Gene

Genomic Locations for LOC100507006 Gene
chr2:64,143,239-64,252,860
(GRCh38/hg38)
Size:
109,622 bases
Orientation:
Plus strand

Genomic View for LOC100507006 Gene

Genes around LOC100507006 on UCSC Golden Path with GeneCards custom track
LOC100507006 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100507006 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100507006 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100507006 Gene

Proteins for LOC100507006 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100507006 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100507006 Gene

Domains & Families for LOC100507006 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100507006 Gene

Function for LOC100507006 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100507006 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100507006 Gene

Localization for LOC100507006 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100507006 Gene

Pathways & Interactions for LOC100507006 Gene

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SuperPathways for LOC100507006 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100507006 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100507006 Gene

Drugs & Compounds for LOC100507006 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC100507006 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100507006 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D404_9606 lncRNA 780 3

RefSeq: NR_120420,

LNCipedia: lnc-LGALSL-2:10,

NONCODE: NONHSAT181890.1,

URS00008B472E_9606 lncRNA 606 3

LncBook: HSALNT0032640,

LNCipedia: lnc-LGALSL-2:9,

NONCODE: NONHSAT071103.2,

URS00008B2266_9606 lncRNA 525 3

LncBook: HSALNT0032631,

LNCipedia: lnc-LGALSL-2:8,

NONCODE: NONHSAT071099.2,

URS00008B8806_9606 lncRNA 506 3

LncBook: HSALNT0032618,

LNCipedia: lnc-LGALSL-2:1,

NONCODE: NONHSAT071091.2,

URS00009C16A5_9606 lncRNA 2487 2

LncBook: HSALNT0032621,

NONCODE: NONHSAT181889.1,

LOC100507006 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100507006 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100507006 Gene

No ASD Table

Relevant External Links for LOC100507006 Gene

GeneLoc Exon Structure for
LOC100507006

Expression for LOC100507006 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100507006 Gene

mRNA expression in normal human tissues for LOC100507006 Gene
mRNA expression by GTEx for LOC100507006 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100507006

SOURCE GeneReport for Unigene cluster for LOC100507006 Gene:

Hs.442789
genes like me logo Genes that share expression patterns with LOC100507006: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100507006 Gene

Orthologs for LOC100507006 Gene

No data available for Orthologs and Evolution for LOC100507006 Gene

Paralogs for LOC100507006 Gene

No data available for Paralogs for LOC100507006 Gene

Variants for LOC100507006 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC100507006 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100507006 Gene

Variant ID Type Subtype PubMed ID
dgv151e55 CNV gain 17911159
dgv3861n100 CNV gain 25217958
dgv705e214 CNV gain 21293372
esv1010948 CNV deletion 20482838
esv2670157 CNV deletion 23128226
esv2759055 CNV gain 17122850
esv29437 CNV gain 19812545
esv3302963 CNV tandem duplication 20981092
esv3557755 CNV deletion 23714750
esv3591077 CNV loss 21293372
nsv1006553 CNV gain 25217958
nsv1013132 CNV loss 25217958
nsv428396 CNV gain 18775914
nsv435714 CNV deletion 17901297
nsv508146 CNV deletion 20534489
nsv582126 CNV gain 21841781
nsv582127 CNV gain 21841781
nsv7313 OTHER inversion 18451855
nsv834243 CNV gain+loss 17160897
nsv9957 CNV gain 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100507006 Gene

Disorders for LOC100507006 Gene

No disorders were found for LOC100507006 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100507006 Gene

Publications for LOC100507006 Gene

  1. lncRNA NR_120420 promotes SH-SY5Y cells apoptosis by regulating NF-κB after oxygen and glucose deprivation. (PMID: 31838253) Tian C … Hong B (Gene 2020) 3

No data available for Mastermind for LOC100507006 Gene

Products for LOC100507006 Gene

Sources for LOC100507006 Gene