Aliases for LOC100506990 Gene

Data sources for LOC100506990 Gene:

RNA type for LOC100506990 Gene

ncRNA

Aliases for LOC100506990 Gene

External Ids for LOC100506990 Gene

Previous GeneCards Identifiers for LOC100506990 Gene

  • GC08P012294

Summaries for LOC100506990 Gene

GeneCards Summary for LOC100506990 Gene

LOC100506990 (Uncharacterized LOC100506990) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100506990 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506990 Gene

Genomics for LOC100506990 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506990 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506990 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506990 Gene

Latest Assembly
chr8:12,436,671-12,624,855
(GRCh38/hg38)
Size:
188,185 bases
Orientation:
Plus strand

Previous Assembly
chr8:12,294,522-12,424,354
(GRCh37/hg19 by Entrez Gene)
Size:
129,833 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr8(PATCHES):5,632,278-5,762,234 (+)

Genomic View for LOC100506990 Gene

Genes around LOC100506990 on UCSC Golden Path with GeneCards custom track
LOC100506990 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100506990 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506990 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506990 Gene

Proteins for LOC100506990 Gene

Post-translational modifications for LOC100506990 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506990 Gene

Domains & Families for LOC100506990 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506990 Gene

Function for LOC100506990 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506990 Gene

Localization for LOC100506990 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506990 Gene

Pathways & Interactions for LOC100506990 Gene

PathCards logo

SuperPathways for LOC100506990 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506990 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506990 Gene

Drugs & Compounds for LOC100506990 Gene

No Compound Related Data Available

Transcripts for LOC100506990 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506990 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075B46F_9606 lncRNA 2296 4

RefSeq: NR_040092,

LncBook: HSALNT0133213,

LNCipedia: lnc-ZNF705D-2:50,

NONCODE: NONHSAT125147.2,

URS000075BA24_9606 lncRNA 3186 1

RefSeq: NR_040091,

URS00008B407A_9606 lncRNA 2646 3

LncBook: HSALNT0133185,

LNCipedia: lnc-ZNF705D-2:39,

NONCODE: NONHSAT125127.2,

URS00009B608F_9606 lncRNA 1614 3

LncBook: HSALNT0133212,

LNCipedia: lnc-ZNF705D-2:49,

NONCODE: NONHSAT125146.2,

URS00009BCA4E_9606 lncRNA 1201 3

LncBook: HSALNT0133215,

LNCipedia: lnc-ZNF705D-2:53,

NONCODE: NONHSAT125150.2,

LOC100506990 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506990 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506990 Gene

No ASD Table

Relevant External Links for LOC100506990 Gene

GeneLoc Exon Structure for
LOC100506990

Expression for LOC100506990 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506990 Gene

mRNA expression in normal human tissues for LOC100506990 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506990

SOURCE GeneReport for Unigene cluster for LOC100506990 Gene:

Hs.656893
genes like me logo Genes that share expression patterns with LOC100506990: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506990 Gene

Orthologs for LOC100506990 Gene

No data available for Orthologs and Evolution for LOC100506990 Gene

Paralogs for LOC100506990 Gene

No data available for Paralogs for LOC100506990 Gene

Variants for LOC100506990 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100506990 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100506990 Gene

Variant ID Type Subtype PubMed ID
dgv1270e199 CNV deletion 23128226
dgv1377e214 CNV gain 21293372
dgv140n17 CNV loss 16327808
dgv154e203 CNV gain+loss 21179565
dgv244e55 CNV gain 17911159
dgv245e55 CNV gain 17911159
dgv246e55 CNV gain 17911159
dgv263n111 CNV deletion 26073780
dgv264n111 CNV duplication 26073780
dgv3776n106 CNV duplication 24896259
dgv3777n106 CNV deletion 24896259
dgv4083e59 CNV duplication 20981092
dgv4084e59 CNV duplication 20981092
dgv4085e59 CNV duplication 20981092
dgv4086e59 CNV duplication 20981092
dgv4087e59 CNV duplication 20981092
dgv4088e59 CNV duplication 20981092
dgv7015n100 CNV gain 25217958
dgv7016n100 CNV gain 25217958
dgv7017n100 CNV gain 25217958
dgv7018n100 CNV gain+loss 25217958
dgv7019n100 CNV gain 25217958
dgv7020n100 CNV loss 25217958
dgv7021n100 CNV loss 25217958
dgv7025n100 CNV gain 25217958
dgv7026n100 CNV gain+loss 25217958
dgv7032n100 CNV gain 25217958
dgv7033n100 CNV gain 25217958
dgv7035n100 CNV loss 25217958
dgv7036n100 CNV gain 25217958
dgv7037n100 CNV loss 25217958
dgv7039n100 CNV gain+loss 25217958
dgv7040n100 CNV gain 25217958
dgv7047n100 CNV gain+loss 25217958
dgv7048n100 CNV loss 25217958
dgv7049n100 CNV gain 25217958
dgv7050n100 CNV gain+loss 25217958
dgv7051n100 CNV gain 25217958
dgv7052n100 CNV gain+loss 25217958
dgv7053n100 CNV loss 25217958
dgv7054n100 CNV gain 25217958
dgv7055n100 CNV gain+loss 25217958
dgv7056n100 CNV gain 25217958
dgv7057n100 CNV loss 25217958
dgv7058n100 CNV loss 25217958
dgv7060n100 CNV loss 25217958
dgv7064n100 CNV loss 25217958
dgv7065n100 CNV gain+loss 25217958
dgv7068n100 CNV gain+loss 25217958
dgv7069n100 CNV loss 25217958
dgv7070n100 CNV gain+loss 25217958
dgv7071n100 CNV gain 25217958
dgv7072n100 CNV loss 25217958
dgv7073n100 CNV loss 25217958
dgv7074n100 CNV gain 25217958
dgv7075n100 CNV gain 25217958
dgv7076n100 CNV gain+loss 25217958
dgv7077n100 CNV gain 25217958
dgv7078n100 CNV gain 25217958
dgv7079n100 CNV gain+loss 25217958
dgv7080n100 CNV loss 25217958
dgv7081n100 CNV loss 25217958
esv25198 CNV gain+loss 19812545
esv2736614 CNV deletion 23290073
esv2759593 CNV gain+loss 17122850
esv3322725 CNV duplication 20981092
esv3347451 CNV duplication 20981092
esv3363291 CNV duplication 20981092
esv3366711 CNV duplication 20981092
esv3380774 CNV duplication 20981092
esv3381581 CNV duplication 20981092
esv3387114 CNV duplication 20981092
esv3393655 CNV duplication 20981092
esv3395925 CNV duplication 20981092
esv3399443 CNV duplication 20981092
esv3410025 CNV duplication 20981092
esv3419328 CNV duplication 20981092
esv3429031 CNV duplication 20981092
esv3434070 CNV duplication 20981092
esv3434912 CNV duplication 20981092
esv3440689 CNV duplication 20981092
esv3444025 CNV duplication 20981092
esv3891341 CNV gain 25118596
nsv1018755 CNV gain 25217958
nsv1020404 CNV loss 25217958
nsv1020906 CNV loss 25217958
nsv1025089 CNV loss 25217958
nsv1027707 CNV loss 25217958
nsv1032173 CNV loss 25217958
nsv1032729 CNV gain+loss 25217958
nsv1032964 CNV gain 25217958
nsv1034659 CNV loss 25217958
nsv1074190 CNV deletion 25765185
nsv1075113 CNV deletion 25765185
nsv1076060 CNV deletion 25765185
nsv1076061 CNV deletion 25765185
nsv1076645 CNV duplication 25765185
nsv1077016 CNV deletion 25765185
nsv1077520 CNV duplication 25765185
nsv1078273 CNV insertion 25765185
nsv1078608 CNV duplication 25765185
nsv1078609 CNV duplication 25765185
nsv1078610 CNV duplication 25765185
nsv1110511 CNV duplication 24896259
nsv1111357 CNV tandem duplication 24896259
nsv1115783 CNV duplication 24896259
nsv1115784 CNV duplication 24896259
nsv1121685 CNV deletion 24896259
nsv1125006 CNV duplication 24896259
nsv1125940 CNV tandem duplication 24896259
nsv1125941 CNV tandem duplication 24896259
nsv1128973 CNV duplication 24896259
nsv1129296 CNV insertion 24896259
nsv1132668 CNV duplication 24896259
nsv1132669 CNV duplication 24896259
nsv1132971 CNV insertion 24896259
nsv1137342 CNV deletion 24896259
nsv1139931 CNV duplication 24896259
nsv1141585 CNV duplication 24896259
nsv1145192 CNV deletion 24896259
nsv1146216 CNV insertion 26484159
nsv1147630 CNV deletion 26484159
nsv1148328 CNV duplication 26484159
nsv1148429 CNV duplication 26484159
nsv1153271 CNV duplication 26484159
nsv1153376 CNV duplication 26484159
nsv1161725 CNV duplication 26073780
nsv1161726 CNV deletion 26073780
nsv428195 CNV gain 18775914
nsv469548 CNV gain+loss 16826518
nsv469553 CNV loss 16826518
nsv471652 CNV gain+loss 15918152
nsv499553 CNV loss 21111241
nsv499686 CNV loss 21111241
nsv516685 CNV gain+loss 19592680
nsv6081 CNV deletion 18451855
nsv6082 CNV deletion 18451855
nsv821657 CNV loss 15273396
nsv8288 CNV gain+loss 18304495
nsv831234 CNV loss 17160897
nsv831235 CNV loss 17160897
nsv831236 CNV loss 17160897
nsv831238 CNV loss 17160897
nsv951106 CNV deletion 24416366
nsv951107 CNV duplication 24416366
nsv958467 CNV deletion 24416366
nsv971288 CNV duplication 23825009
nsv971714 CNV duplication 23825009
nsv971715 CNV duplication 23825009
nsv981994 CNV duplication 23825009

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506990 Gene

Disorders for LOC100506990 Gene

No disorders were found for LOC100506990 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506990 Gene

Publications for LOC100506990 Gene

  1. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. (PMID: 26760575) Uren PJ … Penalva LO (RNA biology 2016) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100506990 Gene

Products for LOC100506990 Gene

Sources for LOC100506990 Gene