Aliases for LOC100506974 Gene

Subcategory (RNA class) for LOC100506974 Gene

ncRNA

Aliases for LOC100506974 Gene

  • Uncharacterized LOC100506974 3

External Ids for LOC100506974 Gene

Previous GeneCards Identifiers for LOC100506974 Gene

  • GC17M013680

Summaries for LOC100506974 Gene

GeneCards Summary for LOC100506974 Gene

LOC100506974 (Uncharacterized LOC100506974) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100506974 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506974 Gene

Genomics for LOC100506974 Gene

GeneHancer (GH) Regulatory Elements for LOC100506974 Gene

Promoters and enhancers for LOC100506974 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J013888 Enhancer 0.7 Ensembl 0.7 +4.5 4541 0.2 ZNF300 ZNF510 ZNF662 ZNF491 ZNF195 NFIC ZNF184 ZNF112 ZNF513 ZNF189 COX10-AS1 LOC100506974 lnc-HS3ST3A1-7
GH17J013886 Enhancer 0.6 Ensembl ENCODE 0.4 +6.6 6641 0.4 POLR2A SMARCA4 PKNOX1 lnc-HS3ST3A1-7 LOC100506974 COX10-AS1
GH17J013887 Enhancer 0.3 ENCODE 0.4 +6.2 6182 0.2 CEBPB LOC100506974 lnc-HS3ST3A1-7 COX10-AS1
GH17J013862 Enhancer 0.4 Ensembl 0.3 +30.3 30340 0.6 SPI1 REST MAX piR-59297-263 lnc-HS3ST3A1-7 LOC100506974 COX10-AS1
GH17J013775 Enhancer 0.9 Ensembl ENCODE 0.1 +116.3 116340 3 ZNF217 KLF4 RFX1 CUX1 ATF2 GATAD2B CTBP1 ESRRA MBD2 FOS HS3ST3A1 piR-33614-109 piR-48759-118 LOC100506974 COX10-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506974 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506974 Gene

Genomic Locations for LOC100506974 Gene
chr17:13,776,628-13,892,841
(GRCh38/hg38)
Size:
116,214 bases
Orientation:
Minus strand
chr17:13,679,945-13,695,867
(GRCh37/hg19)
Size:
15,923 bases
Orientation:
Minus strand

Genomic View for LOC100506974 Gene

Genes around LOC100506974 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506974 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506974 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506974 Gene

Proteins for LOC100506974 Gene

Post-translational modifications for LOC100506974 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506974 Gene

Domains & Families for LOC100506974 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506974 Gene

Function for LOC100506974 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506974 Gene

Localization for LOC100506974 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506974 Gene

Pathways & Interactions for LOC100506974 Gene

PathCards logo

SuperPathways for LOC100506974 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100506974 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506974 Gene

Drugs & Compounds for LOC100506974 Gene

No Compound Related Data Available

Transcripts for LOC100506974 Gene

mRNA/cDNA for LOC100506974 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506974 Gene

No ASD Table

Relevant External Links for LOC100506974 Gene

GeneLoc Exon Structure for
LOC100506974

Expression for LOC100506974 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506974 Gene

mRNA expression in normal human tissues for LOC100506974 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506974

SOURCE GeneReport for Unigene cluster for LOC100506974 Gene:

Hs.643090
genes like me logo Genes that share expression patterns with LOC100506974: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506974 Gene

Orthologs for LOC100506974 Gene

No data available for Orthologs and Evolution for LOC100506974 Gene

Paralogs for LOC100506974 Gene

No data available for Paralogs for LOC100506974 Gene

Variants for LOC100506974 Gene

Additional dbSNP identifiers (rs#s) for LOC100506974 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506974 Gene

Disorders for LOC100506974 Gene

No disorders were found for LOC100506974 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506974 Gene

Publications for LOC100506974 Gene

  1. Genome-wide association study of conduct disorder symptomatology. (PMID: 20585324) Dick DM … Bierut L (Molecular psychiatry 2011) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC100506974 Gene

Products for LOC100506974 Gene

Sources for LOC100506974 Gene