Aliases for LOC100506974 Gene

Data sources for LOC100506974 Gene:

RNA type for LOC100506974 Gene

ncRNA

Aliases for LOC100506974 Gene

External Ids for LOC100506974 Gene

Previous GeneCards Identifiers for LOC100506974 Gene

  • GC17M013680
  • GC17M013776

Summaries for LOC100506974 Gene

GeneCards Summary for LOC100506974 Gene

LOC100506974 (Uncharacterized LOC100506974) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100506974 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506974 Gene

Genomics for LOC100506974 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506974 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J013888 Enhancer 0.7 Ensembl 0.4 +10.5 10524 0.2 NFIC ZNF513 ZNF571 ZNF189 LCORL NFIB NFIA ZNF350 ZNF561 KLF10 lnc-HS3ST3A1-7 LOC100506974 COX10 COX10-AS1 HSALNG0114686 HS3ST3A1
GH17J013886 Enhancer 0.4 Ensembl ENCODE 0.4 +12.4 12424 0.4 PKNOX1 lnc-HS3ST3A1-7 LOC100506974 COX10 COX10-AS1 HSALNG0114686 HS3ST3A1
GH17J013887 Enhancer 0.3 ENCODE 0.4 +12.0 11966 0.2 CEBPB lnc-HS3ST3A1-7 LOC100506974 COX10 COX10-AS1 HSALNG0114686 HS3ST3A1
GH17J013862 Enhancer 0.4 Ensembl 0.3 +36.1 36124 0.6 SPI1 MAX REST piR-59297-263 lnc-HS3ST3A1-7 LOC100506974 COX10 COX10-AS1 HSALNG0114686 HS3ST3A1
GH17J013864 Enhancer 0.3 Ensembl 0.3 +33.8 33824 1.2 NFE2 piR-59297-263 lnc-HS3ST3A1-7 LOC100506974 COX10 COX10-AS1 HSALNG0114686 HS3ST3A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506974 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506974 Gene

Latest Assembly
chr17:13,790,327-13,898,625
(GRCh38/hg38)
Size:
108,299 bases
Orientation:
Minus strand

Genomic View for LOC100506974 Gene

Genes around LOC100506974 on UCSC Golden Path with GeneCards custom track
LOC100506974 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100506974 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506974 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506974 Gene

Proteins for LOC100506974 Gene

Post-translational modifications for LOC100506974 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506974 Gene

Domains & Families for LOC100506974 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506974 Gene

Function for LOC100506974 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506974 Gene

Localization for LOC100506974 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506974 Gene

Pathways & Interactions for LOC100506974 Gene

PathCards logo

SuperPathways for LOC100506974 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506974 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506974 Gene

Drugs & Compounds for LOC100506974 Gene

No Compound Related Data Available

Transcripts for LOC100506974 Gene

LOC100506974 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

mRNA/cDNA for LOC100506974 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506974 Gene

No ASD Table

Relevant External Links for LOC100506974 Gene

GeneLoc Exon Structure for
LOC100506974

Expression for LOC100506974 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506974 Gene

mRNA expression in normal human tissues for LOC100506974 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506974

SOURCE GeneReport for Unigene cluster for LOC100506974 Gene:

Hs.643090
genes like me logo Genes that share expression patterns with LOC100506974: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506974 Gene

Orthologs for LOC100506974 Gene

No data available for Orthologs and Evolution for LOC100506974 Gene

Paralogs for LOC100506974 Gene

No data available for Paralogs for LOC100506974 Gene

Variants for LOC100506974 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100506974 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506974 Gene

Disorders for LOC100506974 Gene

No disorders were found for LOC100506974 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506974 Gene

Publications for LOC100506974 Gene

  1. Genome-wide association study of conduct disorder symptomatology. (PMID: 20585324) Dick DM … Bierut L (Molecular psychiatry 2011) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100506974 Gene

Products for LOC100506974 Gene

Sources for LOC100506974 Gene