Aliases for LOC100506885 Gene

Subcategory (RNA class) for LOC100506885 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100506885 Gene

  • Uncharacterized LOC100506885 3
  • HSALNG0048431 167
  • NONHSAG043129 92
  • Lnc-MBOAT1-2 168

External Ids for LOC100506885 Gene

Previous GeneCards Identifiers for LOC100506885 Gene

  • GC06M019804
  • GC06M019324

Summaries for LOC100506885 Gene

GeneCards Summary for LOC100506885 Gene

LOC100506885 (Uncharacterized LOC100506885) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506885 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506885 Gene

Genomics for LOC100506885 Gene

GeneHancer (GH) Regulatory Elements for LOC100506885 Gene

Promoters and enhancers for LOC100506885 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J019802 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 500.7 +0.2 189 3.3 EP300 HNRNPK NRF1 MYC TCF12 POLR2G PHF8 JUND TEAD4 FOS LOC100506885 ENSG00000228412 ID4 piR-39858-541
GH06J019801 Enhancer 0.3 Ensembl 0.7 +3.2 3192 0.4 GATA3 ENSG00000228412 ID4 LOC100506885 piR-39858-541
GH06J019757 Enhancer 0.7 Ensembl ENCODE 0.3 +46.3 46310 3.4 FOS ESRRA CEBPB GATA3 STAT3 JUND EP300 ESR1 NFE2L2 ENSG00000228412 piR-30853-060 piR-38352-462 LOC100506885
GH06J019730 Enhancer 0.7 Ensembl ENCODE 0.2 +73.3 73292 1.8 JUND CEBPG FOS CEBPB JUN MAX EP300 STAT3 YY1 NANOG ENSG00000228412 piR-38352-462 piR-32214-574 LOC100506885
GH06J019771 Enhancer 0.4 Ensembl 0.3 +32.9 32892 0.2 FOS ZBTB17 CHD7 CEBPB STAT3 piR-39858-541 ENSG00000228412 LOC100506885
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506885 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506885 Gene

Genomic Locations for LOC100506885 Gene
chr6:19,729,421-19,804,793
(GRCh38/hg38)
Size:
75,373 bases
Orientation:
Minus strand
chr6:19,802,395-19,804,983
(GRCh37/hg19)
Size:
2,589 bases
Orientation:
Minus strand

Genomic View for LOC100506885 Gene

Genes around LOC100506885 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506885 Gene

Proteins for LOC100506885 Gene

Post-translational modifications for LOC100506885 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506885 Gene

Domains & Families for LOC100506885 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506885 Gene

Function for LOC100506885 Gene

Phenotypes From GWAS Catalog for LOC100506885 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506885 Gene

Localization for LOC100506885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506885 Gene

Pathways & Interactions for LOC100506885 Gene

PathCards logo

SuperPathways for LOC100506885 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100506885 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506885 Gene

Drugs & Compounds for LOC100506885 Gene

No Compound Related Data Available

Transcripts for LOC100506885 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506885 Gene

No ASD Table

Relevant External Links for LOC100506885 Gene

GeneLoc Exon Structure for
LOC100506885

Expression for LOC100506885 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506885 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506885 Gene

This gene is overexpressed in Thyroid (x6.0) and Testis (x5.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506885

SOURCE GeneReport for Unigene cluster for LOC100506885 Gene:

Hs.346489
genes like me logo Genes that share expression patterns with LOC100506885: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506885 Gene

Orthologs for LOC100506885 Gene

No data available for Orthologs and Evolution for LOC100506885 Gene

Paralogs for LOC100506885 Gene

No data available for Paralogs for LOC100506885 Gene

Variants for LOC100506885 Gene

Additional dbSNP identifiers (rs#s) for LOC100506885 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506885 Gene

Disorders for LOC100506885 Gene

No disorders were found for LOC100506885 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506885 Gene

Publications for LOC100506885 Gene

  1. Genome-wide association study link novel loci to endometriosis. (PMID: 23472165) Albertsen HM … Ward K (PloS one 2013) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC100506885 Gene

Products for LOC100506885 Gene

Sources for LOC100506885 Gene