LOC100506869 Gene (RNA Gene)

Uncharacterized LOC100506869

GC12P058591
GIFtS:
9
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Aliases for LOC100506869 Gene

Subcategory (RNA class) for LOC100506869 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100506869 Gene

  • Uncharacterized LOC100506869 3
  • NONHSAG011473.2 91
  • HSALNG0091712 164
  • Lnc-ATP23-89 165

External Ids for LOC100506869 Gene

Previous GeneCards Identifiers for LOC100506869 Gene

  • GC12P058937
  • GC12P058544

Summaries for LOC100506869 Gene

GeneCards Summary for LOC100506869 Gene

LOC100506869 (Uncharacterized LOC100506869) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506869 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506869 Gene

Genomics for LOC100506869 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100506869 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J058592 Enhancer 0.2 Ensembl 600.7 +1.3 1252 0.2 LOC100506869 piR-38352-117 ENSG00000258231 LINC02388 LRIG3 ATP23
GH12J058668 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.2 +77.3 77264 1.5 ZFP64 ZNF781 ZNF518A PRDM12 lnc-ATP23-8 piR-32325-036 LOC100506869 LINC02388 ENSG00000258231 LRIG3 ATP23
GH12J058639 Enhancer 0.4 Ensembl 0.3 +47.9 47852 0.6 CEBPB GATA3 JUND TCF7L2 piR-32539-010 piR-38352-117 LOC100506869 ENSG00000258231 LINC02388 LRIG3 ATP23
GH12J058763 Enhancer 1.1 Ensembl ENCODE 0.1 +173.6 173629 3 GATAD2A REST TFE3 NFKBIZ NFRKB RCOR2 FOXA1 RFX1 RXRB IRF2 ENSG00000257953 LINC02388 piR-38351-100 LRIG3 LOC100506869 ENSG00000258231 ATP23
GH12J058749 Enhancer 0.7 Ensembl ENCODE 0.1 +158.9 158918 1.2 CEBPB JUND FOS FOSL2 BHLHE40 MAFK JUN NFE2L2 piR-38351-100 LINC02388 LOC100506869 LRIG3 ENSG00000258231 ATP23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506869 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506869 Gene

Genomic Locations for LOC100506869 Gene
chr12:58,591,649-58,812,669
(GRCh38/hg38)
Size:
221,021 bases
Orientation:
Plus strand
chr12:58,937,907-59,206,845
(GRCh37/hg19)
Size:
268,939 bases
Orientation:
Plus strand

Genomic View for LOC100506869 Gene

Genes around LOC100506869 on UCSC Golden Path with GeneCards custom track
LOC100506869 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100506869 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506869 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100506869 Gene

Proteins for LOC100506869 Gene

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  2. Protein
  3. Assay

Post-translational modifications for LOC100506869 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506869 Gene

Domains & Families for LOC100506869 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506869 Gene

Function for LOC100506869 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506869 Gene

Localization for LOC100506869 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506869 Gene

Pathways & Interactions for LOC100506869 Gene

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SuperPathways for LOC100506869 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506869 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506869 Gene

Drugs & Compounds for LOC100506869 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LOC100506869 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506869 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E33D8_9606 lncRNA 423 2

RefSeq: NR_126341,

LNCipedia: lnc-ATP23-89:5,

URS00008B9E4D_9606 lncRNA 454 3

LncBook: HSALNT0190165,

LNCipedia: lnc-ATP23-89:2,

NONCODE: NONHSAT029027.2,

URS00008B6F8F_9606 lncRNA 272 3

LncBook: HSALNT0190179,

LNCipedia: lnc-ATP23-89:9,

NONCODE: NONHSAT029032.2,

URS00008B316E_9606 lncRNA 342 2

LNCipedia: lnc-ATP23-89:8,

NONCODE: NONHSAT029031.2,

URS0000D5950E_9606 lncRNA 422 1

LNCipedia: lnc-ATP23-89:3,

LOC100506869 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506869 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506869 Gene

No ASD Table

Relevant External Links for LOC100506869 Gene

GeneLoc Exon Structure for
LOC100506869

Expression for LOC100506869 Gene

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  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506869 Gene

mRNA expression in normal human tissues for LOC100506869 Gene
mRNA expression by GTEx for LOC100506869 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506869 Gene

This gene is overexpressed in Muscle - Skeletal (x13.0), Minor Salivary Gland (x6.7), Adipose - Visceral (Omentum) (x6.4), and Testis (x4.4).

SOURCE GeneReport for Unigene cluster for LOC100506869 Gene:

Hs.290456
genes like me logo Genes that share expression patterns with LOC100506869: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506869 Gene

Orthologs for LOC100506869 Gene

No data available for Orthologs and Evolution for LOC100506869 Gene

Paralogs for LOC100506869 Gene

No data available for Paralogs for LOC100506869 Gene

Variants for LOC100506869 Gene

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  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC100506869 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506869 Gene

Disorders for LOC100506869 Gene

No disorders were found for LOC100506869 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506869 Gene

Publications for LOC100506869 Gene

  1. Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium. (PMID: 24823311) Guan W … Steffen LM (Circulation. Cardiovascular genetics 2014) 3

No data available for Mastermind for LOC100506869 Gene

Products for LOC100506869 Gene

Sources for LOC100506869 Gene