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Aliases for LOC100506731 Gene

Subcategory (RNA class) for LOC100506731 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100506731 Gene

  • Uncharacterized LOC100506731 3
  • AL049775.1 5

External Ids for LOC100506731 Gene

Previous GeneCards Identifiers for LOC100506731 Gene

  • GC14M085990

Summaries for LOC100506731 Gene

GeneCards Summary for LOC100506731 Gene

LOC100506731 (Uncharacterized LOC100506731) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100506731 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506731 Gene

Genomics for LOC100506731 Gene

GeneHancer (GH) Regulatory Elements for LOC100506731 Gene

Promoters and enhancers for LOC100506731 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J085586 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -57.1 -57110 1.4 SMARCE1 PKNOX1 NFIB DPF2 FOXA1 E2F1 CTBP1 JUND GATA3 POLR2A FLRT2 LOC100506731 GC14P085297 LINC02328
GH14J085607 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -77.5 -77530 1.5 JUND POLR3A STAT3 CEBPB FOS EP300 FLRT2 LOC100506731 GC14P085297 LINC02328
GH14J085470 Enhancer 1.1 Ensembl ENCODE 10.9 +58.7 58709 2.1 ELF3 FOXA2 ARID4B SIN3A ZSCAN9 RARA TCF12 FOS THAP11 MIXL1 FLRT2 LOC100506731 ENSG00000258902 LINC00911 GC14P085297 GC14P085198
GH14J085571 Enhancer 1 Ensembl ENCODE dbSUPER 11.8 -44.4 -44426 6.4 JUN BACH1 MAFF JUND POLR2A CREB1 HNF4A FOS FOSL2 MAFK FLRT2 LOC100506731 GC14P085297 LINC02328
GH14J085564 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.7 -35.9 -35870 2.9 JUND POLR2A JUN CEBPB FOS FLRT2 LOC100506731 GC14P085297 LINC02328
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506731 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506731 Gene

Genomic Locations for LOC100506731 Gene
chr14:85,524,432-85,530,319
(GRCh38/hg38)
Size:
5,888 bases
Orientation:
Minus strand
chr14:85,990,776-85,996,469
(GRCh37/hg19)
Size:
5,694 bases
Orientation:
Minus strand

Genomic View for LOC100506731 Gene

Genes around LOC100506731 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506731 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506731 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506731 Gene

Proteins for LOC100506731 Gene

Post-translational modifications for LOC100506731 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506731 Gene

Domains & Families for LOC100506731 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506731 Gene

Function for LOC100506731 Gene

Phenotypes From GWAS Catalog for LOC100506731 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506731 Gene

Localization for LOC100506731 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506731 Gene

Pathways & Interactions for LOC100506731 Gene

SuperPathways for LOC100506731 Gene

No Data Available

Interacting Proteins for LOC100506731 Gene

Gene Ontology (GO) - Biological Process for LOC100506731 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100506731 Gene

Drugs & Compounds for LOC100506731 Gene

No Compound Related Data Available

Transcripts for LOC100506731 Gene

mRNA/cDNA for LOC100506731 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100506731 Gene

Uncharacterized LOC100506731:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506731 Gene

No ASD Table

Relevant External Links for LOC100506731 Gene

GeneLoc Exon Structure for
LOC100506731

Expression for LOC100506731 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506731 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506731 Gene

This gene is overexpressed in Brain - Cortex (x6.9), Brain - Frontal Cortex (BA9) (x5.6), and Brain - Anterior cingulate cortex (BA24) (x5.0).

SOURCE GeneReport for Unigene cluster for LOC100506731 Gene:

Hs.546975
genes like me logo Genes that share expression patterns with LOC100506731: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506731 Gene

Orthologs for LOC100506731 Gene

Evolution for LOC100506731 Gene

ENSEMBL:
Gene Tree for LOC100506731 (if available)
TreeFam:
Gene Tree for LOC100506731 (if available)

No data available for Orthologs for LOC100506731 Gene

Paralogs for LOC100506731 Gene

No data available for Paralogs for LOC100506731 Gene

Variants for LOC100506731 Gene

Sequence variations from dbSNP and Humsavar for LOC100506731 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000240436 -- 85,531,701(-) C/A upstream_transcript_variant
rs1000314587 -- 85,531,379(-) G/A non_coding_transcript_variant
rs1000548158 -- 85,526,709(-) G/A intron_variant
rs1000577900 -- 85,532,749(-) G/C upstream_transcript_variant
rs1000651598 -- 85,532,408(-) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506731 Gene

Disorders for LOC100506731 Gene

Additional Disease Information for LOC100506731

No disorders were found for LOC100506731 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506731 Gene

Publications for LOC100506731 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100506731 Gene

Sources for LOC100506731 Gene

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