Aliases for LOC100506725 Gene

Subcategory (RNA class) for LOC100506725 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC100506725 Gene

  • Uncharacterized LOC100506725 3

External Ids for LOC100506725 Gene

Previous GeneCards Identifiers for LOC100506725 Gene

  • GC07P035757
  • GC07P035761
  • GC07P035715
  • GC07P035793
  • GC07P035802

Summaries for LOC100506725 Gene

GeneCards Summary for LOC100506725 Gene

LOC100506725 (Uncharacterized LOC100506725) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506725 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506725 Gene

Genomics for LOC100506725 Gene

GeneHancer (GH) Regulatory Elements for LOC100506725 Gene

Promoters and enhancers for LOC100506725 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J035715 Promoter/Enhancer 0.9 Ensembl ENCODE dbSUPER 750.6 +0.4 375 2 POLR2A SCRT2 EGR1 ENSG00000227544 LOC100506725 ENSG00000271122 HERPUD2 SEPTIN7 ENSG00000228878 piR-39341-351
GH07J035714 Enhancer 0.7 ENCODE dbSUPER 750.6 -1.2 -1248 0.9 ZNF217 RAD21 CTBP1 PKNOX1 DPF2 GATA3 ZNF687 CTCF RCOR1 SMARCE1 ENSG00000227544 LOC100506725 ENSG00000271122 ENSG00000228878 SEPTIN7 HERPUD2
GH07J035718 Enhancer 0.4 FANTOM5 dbSUPER 750.6 +1.8 1764 0.1 LOC100506725 SEPTIN7 HERPUD2 ENSG00000228878 ENSG00000227544 piR-39341-351
GH07J035724 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +11.4 11398 7 ZNF24 SP1 JUND MYC ETV6 RELA L3MBTL2 RAD21 NKRF POLR2A HERPUD2 ENSG00000228878 SEPTIN7 ENSG00000271122 ENSG00000227544 LOC100506725 piR-39341-351
GH07J035736 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +20.4 20364 1.2 NR2F1 NR2F6 HLF SP1 CEBPG PPARG CEBPA SOX13 GATAD2A CTBP1 piR-39341-351 LOC100506725
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506725 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506725 Gene

Genomic Locations for LOC100506725 Gene
chr7:35,716,437-35,719,712
(GRCh38/hg38)
Size:
3,276 bases
Orientation:
Plus strand

Genomic View for LOC100506725 Gene

Genes around LOC100506725 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506725 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506725 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506725 Gene

Proteins for LOC100506725 Gene

Post-translational modifications for LOC100506725 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506725 Gene

Domains & Families for LOC100506725 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506725 Gene

Function for LOC100506725 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506725 Gene

Localization for LOC100506725 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506725 Gene

Pathways & Interactions for LOC100506725 Gene

PathCards logo

SuperPathways for LOC100506725 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506725 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100506725 Gene

Drugs & Compounds for LOC100506725 Gene

No Compound Related Data Available

Transcripts for LOC100506725 Gene

mRNA/cDNA for LOC100506725 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506725 Gene

No ASD Table

Relevant External Links for LOC100506725 Gene

GeneLoc Exon Structure for
LOC100506725

Expression for LOC100506725 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506725 Gene

SOURCE GeneReport for Unigene cluster for LOC100506725 Gene:

Hs.304253
genes like me logo Genes that share expression patterns with LOC100506725: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506725 Gene

Orthologs for LOC100506725 Gene

No data available for Orthologs and Evolution for LOC100506725 Gene

Paralogs for LOC100506725 Gene

No data available for Paralogs for LOC100506725 Gene

Variants for LOC100506725 Gene

Sequence variations from dbSNP and Humsavar for LOC100506725 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000861228 -- 35,717,064(+) G/A intron_variant, non_coding_transcript_variant
rs1001079344 -- 35,717,404(+) C/A intron_variant
rs1002240937 -- 35,718,158(+) T/C intron_variant
rs1003271350 -- 35,719,138(+) T/C non_coding_transcript_variant
rs1003651178 -- 35,719,496(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100506725 Gene

Variant ID Type Subtype PubMed ID
dgv419n21 CNV gain 19592680
nsv1026491 CNV gain 25217958
nsv5699 CNV insertion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506725 Gene

Disorders for LOC100506725 Gene

No disorders were found for LOC100506725 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506725 Gene

Publications for LOC100506725 Gene

  1. Identification of genes related to Parkinson's disease using expressed sequence tags. (PMID: 17213182) Kim JM … Kim NS (DNA research : an international journal for rapid publication of reports on genes and genomes 2006) 3 56
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

No data available for External Links for LOC100506725 Gene

Products for LOC100506725 Gene

Sources for LOC100506725 Gene