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LOC100506691 Gene(RNA Gene)

Uncharacterized LOC100506691

GCID:
GC12P122063
GIFtS:
11
Genes Participants
UDN Logo

Aliases for LOC100506691 Gene

Subcategory (RNA class) for LOC100506691 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100506691 Gene

  • Uncharacterized LOC100506691 3
  • AC156455.1 5

External Ids for LOC100506691 Gene

Previous GeneCards Identifiers for LOC100506691 Gene

  • GC12P122505
  • GC12P122503

Summaries for LOC100506691 Gene

GeneCards Summary for LOC100506691 Gene

LOC100506691 (Uncharacterized LOC100506691) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100506691 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506691 Gene

Genomics for LOC100506691 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC100506691 Gene

Promoters and enhancers for LOC100506691 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12I122061 Enhancer 1.5 Ensembl ENCODE dbSUPER 563.8 +0.2 214 4.6 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B FEZF1 DMAP1 ZBTB7B YY1 LOC100506691 ZCCHC8 RSRC2 ANAPC5 ENSG00000272849 SETD1B PSMD9 KNTC1 BCL7A ENSG00000255856
GH12I122085 Enhancer 1.4 Ensembl ENCODE dbSUPER 13.7 +30.4 30398 15.5 PKNOX1 SMAD1 FOXA2 ARNT SIN3A FEZF1 ZNF766 REST ZNF592 SREBF1 MLXIP LOC100506691 LRRC43 B3GNT4 ARL6IP4 TMEM120B ENSG00000272849
GH12I122071 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.6 +9.4 9357 1.5 HDAC1 FOXA2 PKNOX1 ATF1 ARNT SIN3A MZF1 FEZF1 YY1 ZNF335 LOC100506691 DIABLO LRRC43 MLXIP
GH12I122104 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.2 +46.6 46594 10.2 PKNOX1 CLOCK FOXA2 FEZF1 ZBTB40 RARA ZNF121 ZSCAN5C FOS RUNX3 MLXIP LOC100506691 LRRC43 B3GNT4 IL31 RNU7-170P PSMD9 ENSG00000256950 HPD
GH12I122054 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.1 -7.8 -7842 2.4 PKNOX1 RB1 ARID4B SIN3A ZNF2 IRF4 ZNF48 RAD21 YY1 ZNF121 LOC100506691 LRRC43 B3GNT4 DIABLO MLXIP BCL7A ENSG00000255856
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100506691 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506691 Gene

Genomic Locations for LOC100506691 Gene
chr12:122,063,253-122,068,616
(GRCh38/hg38)
Size:
5,364 bases
Orientation:
Plus strand
chr12:122,501,212-122,506,670
(GRCh37/hg19)

Genomic View for LOC100506691 Gene

Genes around LOC100506691 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506691 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506691 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100506691 Gene

Proteins for LOC100506691 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100506691 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506691 Gene

Domains & Families for LOC100506691 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506691 Gene

Function for LOC100506691 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100506691 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506691 Gene

Localization for LOC100506691 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506691 Gene

Pathways & Interactions for LOC100506691 Gene

SuperPathways for LOC100506691 Gene

PathCards logo More details on SuperPathways for LOC100506691
No Data Available

Interacting Proteins for LOC100506691 Gene

Gene Ontology (GO) - Biological Process for LOC100506691 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100506691 Gene

Drugs & Compounds for LOC100506691 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100506691 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC100506691 Gene

(6) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100506691 Gene

Uncharacterized LOC100506691:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506691 Gene

No ASD Table

Relevant External Links for LOC100506691 Gene

GeneLoc Exon Structure for
LOC100506691

Expression for LOC100506691 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506691 Gene

mRNA expression in normal human tissues for LOC100506691 Gene
mRNA expression by GTEx for LOC100506691 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506691 Gene

This gene is overexpressed in Pancreas (x9.3), Uterus (x5.1), Colon - Sigmoid (x4.5), and Ovary (x4.0).

SOURCE GeneReport for Unigene cluster for LOC100506691 Gene:

Hs.536336
genes like me logo Genes that share expression patterns with LOC100506691: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506691 Gene

Orthologs for LOC100506691 Gene

Evolution for LOC100506691 Gene

ENSEMBL:
Gene Tree for LOC100506691 (if available)
TreeFam:
Gene Tree for LOC100506691 (if available)

No data available for Orthologs for LOC100506691 Gene

Paralogs for LOC100506691 Gene

No data available for Paralogs for LOC100506691 Gene

Variants for LOC100506691 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC100506691 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000283966 -- 122,064,230(+) C/T intron_variant
rs1001015888 -- 122,065,932(+) A/C/G intron_variant
rs1001021855 -- 122,062,604(+) G/T upstream_transcript_variant
rs1001530354 -- 122,066,175(+) G/A intron_variant
rs1002129823 -- 122,064,913(+) A/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506691 Gene

Disorders for LOC100506691 Gene

Additional Disease Information for LOC100506691

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC100506691 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506691 Gene

Publications for LOC100506691 Gene

No publications were found for LOC100506691 Gene.

Products for LOC100506691 Gene

Sources for LOC100506691 Gene

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