Aliases for LOC100506691 Gene

Data sources for LOC100506691 Gene:

Subcategory (RNA class) for LOC100506691 Gene

ncRNA

Aliases for LOC100506691 Gene

External Ids for LOC100506691 Gene

Previous GeneCards Identifiers for LOC100506691 Gene

  • GC12P122505
  • GC12P122503

Summaries for LOC100506691 Gene

GeneCards Summary for LOC100506691 Gene

LOC100506691 (Uncharacterized LOC100506691) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC100506691 include Childhood Acute Lymphocytic Leukemia.

Rfam classification for LOC100506691 Gene

  • Metazoan signal recognition particle RNA

Additional gene information for LOC100506691 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC100506691 Gene

Genomics for LOC100506691 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506691 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506691 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506691 Gene

Latest Assembly
chr12:122,063,289-122,078,514
(GRCh38/hg38)
Size:
15,226 bases
Orientation:
Plus strand

Previous Assembly
chr12:122,501,196-122,506,466
(GRCh37/hg19 by Entrez Gene)
Size:
5,271 bases
Orientation:
Plus strand

chr12:122,501,212-122,506,522
(GRCh37/hg19 by Ensembl)
Size:
5,311 bases
Orientation:
Plus strand

Genomic View for LOC100506691 Gene

Genes around LOC100506691 on UCSC Golden Path with GeneCards custom track
LOC100506691 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100506691 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506691 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506691 Gene

Proteins for LOC100506691 Gene

Post-translational modifications for LOC100506691 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506691 Gene

Domains & Families for LOC100506691 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506691 Gene

Function for LOC100506691 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506691 Gene

Localization for LOC100506691 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506691 Gene

Pathways & Interactions for LOC100506691 Gene

PathCards logo

SuperPathways for LOC100506691 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506691 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506691 Gene

Drugs & Compounds for LOC100506691 Gene

No Compound Related Data Available

Transcripts for LOC100506691 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506691 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BC968_9606 lncRNA 855 4

Ensembl: ENST00000538790 (view in UCSC) ,

LncBook: HSALNT0196180,

LNCipedia: lnc-MLXIP-12:2,

NONCODE: NONHSAT031484.2,

URS00008B5CF2_9606 lncRNA 590 4

Ensembl: ENST00000540968 (view in UCSC) ,

LncBook: HSALNT0196182,

LNCipedia: lnc-MLXIP-12:3,

NONCODE: NONHSAT031485.2,

URS00008C00A8_9606 lncRNA 895 3

Ensembl: ENST00000423999 (view in UCSC) ,

LNCipedia: lnc-MLXIP-12:13,

NONCODE: NONHSAT031486.2,

URS0000A77235_9606 lncRNA 815 2

RefSeq: NR_135044,

LNCipedia: lnc-MLXIP-12:1,

URS0000EF35E3_9606 lncRNA 850 1

Ensembl: ENST00000653475 (view in UCSC) ,

LOC100506691 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506691 Gene

6 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506691 Gene

No ASD Table

Relevant External Links for LOC100506691 Gene

GeneLoc Exon Structure for
LOC100506691

Expression for LOC100506691 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506691 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506691 Gene

This gene is overexpressed in Pancreas (x9.3), Uterus (x5.1), Colon - Sigmoid (x4.5), and Ovary (x4.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506691

SOURCE GeneReport for Unigene cluster for LOC100506691 Gene:

Hs.536336
genes like me logo Genes that share expression patterns with LOC100506691: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506691 Gene

Orthologs for LOC100506691 Gene

Evolution for LOC100506691 Gene

ENSEMBL:
Gene Tree for LOC100506691 (if available)
TreeFam:
Gene Tree for LOC100506691 (if available)

No data available for Orthologs for LOC100506691 Gene

Paralogs for LOC100506691 Gene

No data available for Paralogs for LOC100506691 Gene

Variants for LOC100506691 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100506691 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506691 Gene

Disorders for LOC100506691 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC100506691 Gene - From: LNC

Disorder Aliases PubMed IDs
childhood acute lymphocytic leukemia
  • childhood acute lymphoblastic leukemia
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC100506691

Open Targets Platform
Open Targets Platform
genes like me logo Genes that share disorders with LOC100506691: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC100506691 Gene

Publications for LOC100506691 Gene

  1. A childhood acute lymphoblastic leukemia-specific lncRNA implicated in prednisolone resistance, cell proliferation, and migration. (PMID: 27980230) Ouimet M … Sinnett D (Oncotarget 2017) 74

No data available for Mastermind for LOC100506691 Gene

Products for LOC100506691 Gene

Sources for LOC100506691 Gene