Aliases for LOC100506675 Gene

Subcategory (RNA class) for LOC100506675 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100506675 Gene

  • Uncharacterized LOC100506675 3
  • Novel Transcript 5
  • NONHSAG007976.2 91
  • HSALNG0083451 164
  • AL035078.1 5
  • Lnc-PAX6-2 165

External Ids for LOC100506675 Gene

Previous GeneCards Identifiers for LOC100506675 Gene

  • GC11M032057

Summaries for LOC100506675 Gene

GeneCards Summary for LOC100506675 Gene

LOC100506675 (Uncharacterized LOC100506675) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506675 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506675 Gene

Genomics for LOC100506675 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506675 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506675 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506675 Gene

Genomic Locations for LOC100506675 Gene
chr11:32,030,544-32,041,563
(GRCh38/hg38)
Size:
11,020 bases
Orientation:
Minus strand
chr11:32,057,527-32,062,864
(GRCh37/hg19)
Size:
5,338 bases
Orientation:
Minus strand

Genomic View for LOC100506675 Gene

Genes around LOC100506675 on UCSC Golden Path with GeneCards custom track
LOC100506675 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100506675 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506675 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506675 Gene

Proteins for LOC100506675 Gene

Post-translational modifications for LOC100506675 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506675 Gene

Domains & Families for LOC100506675 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506675 Gene

Function for LOC100506675 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506675 Gene

Localization for LOC100506675 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506675 Gene

Pathways & Interactions for LOC100506675 Gene

PathCards logo

SuperPathways for LOC100506675 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506675 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506675 Gene

Drugs & Compounds for LOC100506675 Gene

No Compound Related Data Available

Transcripts for LOC100506675 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506675 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E18E_9606 lncRNA 822 3

RefSeq: NR_120526,

Ensembl: ENST00000531962 (view in UCSC) ,

LNCipedia: lnc-PAX6-2:8,

URS000002E372_9606 lncRNA 413 2

Ensembl: ENST00000531627 (view in UCSC) ,

LNCipedia: lnc-PAX6-2:2,

URS000075A091_9606 lncRNA 522 1

RefSeq: NR_120527,

URS00008BB3BD_9606 lncRNA 902 3

LncBook: HSALNT0173705,

LNCipedia: lnc-PAX6-2:6,

NONCODE: NONHSAT018641.2,

URS00008BF424_9606 lncRNA 643 3

LncBook: HSALNT0173707,

LNCipedia: lnc-PAX6-2:5,

NONCODE: NONHSAT018642.2,

LOC100506675 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506675 Gene

5 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506675 Gene

No ASD Table

Relevant External Links for LOC100506675 Gene

GeneLoc Exon Structure for
LOC100506675

Expression for LOC100506675 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506675 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506675

SOURCE GeneReport for Unigene cluster for LOC100506675 Gene:

Hs.446169
genes like me logo Genes that share expression patterns with LOC100506675: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506675 Gene

Orthologs for LOC100506675 Gene

Evolution for LOC100506675 Gene

ENSEMBL:
Gene Tree for LOC100506675 (if available)
TreeFam:
Gene Tree for LOC100506675 (if available)

No data available for Orthologs for LOC100506675 Gene

Paralogs for LOC100506675 Gene

No data available for Paralogs for LOC100506675 Gene

Variants for LOC100506675 Gene

Additional dbSNP identifiers (rs#s) for LOC100506675 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100506675 Gene

Variant ID Type Subtype PubMed ID
esv3625846 CNV gain 21293372
nsv832107 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506675 Gene

Disorders for LOC100506675 Gene

Additional Disease Information for LOC100506675

No disorders were found for LOC100506675 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506675 Gene

Publications for LOC100506675 Gene

No publications were found for LOC100506675 Gene.

No data available for Mastermind for LOC100506675 Gene

Products for LOC100506675 Gene

Sources for LOC100506675 Gene