Aliases for LOC100506639 Gene

Data sources for LOC100506639 Gene:

RNA type for LOC100506639 Gene

lncRNA

Aliases for LOC100506639 Gene

External Ids for LOC100506639 Gene

Previous GeneCards Identifiers for LOC100506639 Gene

  • GC05P043068
  • GC05P043070
  • GC05P043072
  • GC05P043075
  • GC05P043083
  • GC05P043094
  • GC05P043107
  • GC05P043117
  • GC05P043113
  • GC05P043129
  • GC05P043204
  • GC05P043220
  • GC05P043227
  • GC05P043254
  • GC05P043139
  • GC05P043147
  • GC05P043154
  • GC05P043164
  • GC05P043172
  • GC05P043175
  • GC05P043182
  • GC05P043189
  • GC05P043281
  • GC05P043335

Summaries for LOC100506639 Gene

GeneCards Summary for LOC100506639 Gene

LOC100506639 (Uncharacterized LOC100506639) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506639 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506639 Gene

Genomics for LOC100506639 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506639 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506639 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506639 Gene

Latest Assembly
chr5:43,064,987-43,100,562
(GRCh38/hg38)
Size:
35,576 bases
Orientation:
Plus strand

Previous Assembly
chr5:43,067,125-43,093,660
(GRCh37/hg19 by Entrez Gene)
Size:
26,536 bases
Orientation:
Plus strand

Genomic View for LOC100506639 Gene

Genes around LOC100506639 on UCSC Golden Path with GeneCards custom track
LOC100506639 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100506639 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506639 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506639 Gene

Proteins for LOC100506639 Gene

Post-translational modifications for LOC100506639 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506639 Gene

Domains & Families for LOC100506639 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506639 Gene

Function for LOC100506639 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506639 Gene

Localization for LOC100506639 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506639 Gene

Pathways & Interactions for LOC100506639 Gene

PathCards logo

SuperPathways for LOC100506639 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506639 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506639 Gene

Drugs & Compounds for LOC100506639 Gene

No Compound Related Data Available

Transcripts for LOC100506639 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506639 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075D236_9606 lncRNA 1551 2

RefSeq: NR_102752,

LNCipedia: lnc-ZNF131-2:12,

URS00008B227C_9606 lncRNA 5958 3

LncBook: HSALNT0087214,

LNCipedia: lnc-ZNF131-2:5,

NONCODE: NONHSAT101274.2,

URS00008C068E_9606 lncRNA 3468 3

LncBook: HSALNT0087221,

LNCipedia: lnc-ZNF131-2:15,

NONCODE: NONHSAT101284.2,

URS00009B5A92_9606 lncRNA 2423 3

LncBook: HSALNT0087224,

LNCipedia: lnc-ZNF131-2:20,

NONCODE: NONHSAT202553.1,

URS00008B3E3B_9606 lncRNA 1344 3

LncBook: HSALNT0087223,

LNCipedia: lnc-ZNF131-2:19,

NONCODE: NONHSAT202552.1,

LOC100506639 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506639 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506639 Gene

No ASD Table

Relevant External Links for LOC100506639 Gene

GeneLoc Exon Structure for
LOC100506639

Expression for LOC100506639 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506639 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506639

SOURCE GeneReport for Unigene cluster for LOC100506639 Gene:

Hs.666493
genes like me logo Genes that share expression patterns with LOC100506639: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506639 Gene

Orthologs for LOC100506639 Gene

No data available for Orthologs and Evolution for LOC100506639 Gene

Paralogs for LOC100506639 Gene

No data available for Paralogs for LOC100506639 Gene

Variants for LOC100506639 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100506639 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100506639 Gene

Variant ID Type Subtype PubMed ID
esv2657906 CNV deletion 23128226
esv3604889 CNV loss 21293372
nsv462126 CNV gain 19166990
nsv597925 CNV gain 21841781
nsv950674 CNV deletion 24416366

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506639 Gene

Disorders for LOC100506639 Gene

No disorders were found for LOC100506639 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506639 Gene

Publications for LOC100506639 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3

No data available for Mastermind for LOC100506639 Gene

Products for LOC100506639 Gene

Sources for LOC100506639 Gene