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Aliases for LOC100506606 Gene
Summaries for LOC100506606 Gene
GeneCards Summary for LOC100506606 Gene
LOC100506606 (Uncharacterized LOC100506606) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100506606 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506606 Gene
Genomics for LOC100506606 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100506606 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J029316 | Enhancer | 0.9 | Ensembl ENCODE | 600.7 | +0.4 | 411 | 2.3 | CREB1 CTCF JUND PRDM1 ZNF143 POLR2A REST RAD21 TRIM22 IRF3 | ENSG00000257176 LOC100506606 ENSG00000275476 ERGIC2 FAR2 | |
| GH12J029319 | Enhancer | 0.9 | FANTOM5 Ensembl ENCODE | 0.7 | -2.7 | -2742 | 2.4 | JUND CEBPB FOS HNF4A RXRA JUN SP1 ZNF680 | ERGIC2 ENSG00000257176 LOC100506606 ENSG00000274315 FAR2 | |
| GH12J029278 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +38.8 | 38848 | 1.2 | JUND YY1 POLR2A | ENSG00000275476 ENSG00000257176 FAR2 LOC100506606 ERGIC2 | |
| GH12J029285 | Enhancer | 0.4 | Ensembl | 0.3 | +31.6 | 31647 | 0.8 | RCOR1 JUND POLR2A | ENSG00000257176 ENSG00000275476 LOC100506606 ERGIC2 FAR2 | |
| GH12J029280 | Enhancer | 0.4 | Ensembl | 0.3 | +35.1 | 35148 | 2.6 | CHD2 HLF POLR2A PKNOX1 | ENSG00000257176 FAR2 ENSG00000275476 LOC100506606 ERGIC2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100506606 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC100506606 Gene
Genomic Locations for LOC100506606 Gene
- chr12:29,280,415-29,317,848
- (GRCh38/hg38)
- Size:
- 37,434 bases
- Orientation:
- Minus strand
Genomic View for LOC100506606 Gene
Genes around LOC100506606 on UCSC Golden Path with GeneCards custom track
LOC100506606 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p11.22 by Entrez Gene
LOC100506606 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100506606 Gene
Proteins for LOC100506606 Gene
Post-translational modifications for LOC100506606 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100506606
- Origene Custom Protein Services for LOC100506606
No data available for DME Specific Peptides for LOC100506606 Gene
Domains & Families for LOC100506606 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506606 Gene
Function for LOC100506606 Gene
Phenotypes From GWAS Catalog for LOC100506606 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506606 Gene
Localization for LOC100506606 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506606 Gene
Transcripts for LOC100506606 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506606 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075AC8B_9606 | lncRNA | 2382 | 1 |
RefSeq: NR_103860, |
LOC100506606 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100506606 Gene
- 2 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100506606 Gene
- GeneLoc Exon Structure for
- LOC100506606
Expression for LOC100506606 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506606
SOURCE GeneReport for Unigene cluster for LOC100506606 Gene:
Hs.298851
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506606 Gene
Orthologs for LOC100506606 Gene
No data available for Orthologs and Evolution for LOC100506606 Gene
Paralogs for LOC100506606 Gene
No data available for Paralogs for LOC100506606 Gene
Variants for LOC100506606 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100506606 Gene
| SNP ID | Clinical significance and condition | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 791498 | Benign: not provided | 29,311,020(-) | C/T | INTRON_VARIANT |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506606 Gene
Disorders for LOC100506606 Gene
No disorders were found for LOC100506606 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506606 Gene
Publications for LOC100506606 Gene
- New gene functions in megakaryopoiesis and platelet formation. (PMID: 22139419) Gieger C … Soranzo N (Nature 2011) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
No data available for Mastermind for LOC100506606 Gene
Products for LOC100506606 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100506606
- Origene Custom Protein Services for LOC100506606
- Browse OriGene Inhibitory RNA Products For LOC100506606
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100506606
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100506606
- Browse Sino Biological cDNA Clones
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- High-throughput Antibody Production Service
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100506606
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100506606
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100506606
Sources for LOC100506606 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB