Aliases for LOC100506606 Gene

Subcategory (RNA class) for LOC100506606 Gene

lncRNA

Aliases for LOC100506606 Gene

  • Uncharacterized LOC100506606 3

External Ids for LOC100506606 Gene

Previous GeneCards Identifiers for LOC100506606 Gene

  • GC12M029434

Summaries for LOC100506606 Gene

GeneCards Summary for LOC100506606 Gene

LOC100506606 (Uncharacterized LOC100506606) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506606 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506606 Gene

Genomics for LOC100506606 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506606 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J029316 Enhancer 0.9 Ensembl ENCODE 600.7 +0.4 411 2.3 CREB1 CTCF JUND PRDM1 ZNF143 POLR2A REST RAD21 TRIM22 IRF3 ENSG00000257176 LOC100506606 ENSG00000275476 ERGIC2 FAR2
GH12J029319 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.7 -2.7 -2742 2.4 JUND CEBPB FOS HNF4A RXRA JUN SP1 ZNF680 ERGIC2 ENSG00000257176 LOC100506606 ENSG00000274315 FAR2
GH12J029278 Enhancer 0.6 Ensembl ENCODE 0.3 +38.8 38848 1.2 JUND YY1 POLR2A ENSG00000275476 ENSG00000257176 FAR2 LOC100506606 ERGIC2
GH12J029285 Enhancer 0.4 Ensembl 0.3 +31.6 31647 0.8 RCOR1 JUND POLR2A ENSG00000257176 ENSG00000275476 LOC100506606 ERGIC2 FAR2
GH12J029280 Enhancer 0.4 Ensembl 0.3 +35.1 35148 2.6 CHD2 HLF POLR2A PKNOX1 ENSG00000257176 FAR2 ENSG00000275476 LOC100506606 ERGIC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506606 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506606 Gene

Genomic Locations for LOC100506606 Gene
chr12:29,280,415-29,317,848
(GRCh38/hg38)
Size:
37,434 bases
Orientation:
Minus strand

Genomic View for LOC100506606 Gene

Genes around LOC100506606 on UCSC Golden Path with GeneCards custom track
LOC100506606 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100506606 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506606 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506606 Gene

Proteins for LOC100506606 Gene

Post-translational modifications for LOC100506606 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506606 Gene

Domains & Families for LOC100506606 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506606 Gene

Function for LOC100506606 Gene

Phenotypes From GWAS Catalog for LOC100506606 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506606 Gene

Localization for LOC100506606 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506606 Gene

Pathways & Interactions for LOC100506606 Gene

PathCards logo

SuperPathways for LOC100506606 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506606 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506606 Gene

Drugs & Compounds for LOC100506606 Gene

No Compound Related Data Available

Transcripts for LOC100506606 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506606 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075AC8B_9606 lncRNA 2382 1

RefSeq: NR_103860,

LOC100506606 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506606 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506606 Gene

No ASD Table

Relevant External Links for LOC100506606 Gene

GeneLoc Exon Structure for
LOC100506606

Expression for LOC100506606 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506606 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506606

SOURCE GeneReport for Unigene cluster for LOC100506606 Gene:

Hs.298851
genes like me logo Genes that share expression patterns with LOC100506606: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506606 Gene

Orthologs for LOC100506606 Gene

No data available for Orthologs and Evolution for LOC100506606 Gene

Paralogs for LOC100506606 Gene

No data available for Paralogs for LOC100506606 Gene

Variants for LOC100506606 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100506606 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
791498 Benign: not provided 29,311,020(-) C/T INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100506606 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100506606 Gene

Variant ID Type Subtype PubMed ID
nsv975465 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506606 Gene

Disorders for LOC100506606 Gene

No disorders were found for LOC100506606 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506606 Gene

Publications for LOC100506606 Gene

  1. New gene functions in megakaryopoiesis and platelet formation. (PMID: 22139419) Gieger C … Soranzo N (Nature 2011) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100506606 Gene

Products for LOC100506606 Gene

Sources for LOC100506606 Gene