LOC100506606 Gene (RNA Gene)

Uncharacterized LOC100506606

GC12M029280
GIFtS:
11
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Aliases for LOC100506606 Gene

Data sources for LOC100506606 Gene:

Subcategory (RNA class) for LOC100506606 Gene

lncRNA

Aliases for LOC100506606 Gene

External Ids for LOC100506606 Gene

Previous GeneCards Identifiers for LOC100506606 Gene

  • GC12M029434

Summaries for LOC100506606 Gene

GeneCards Summary for LOC100506606 Gene

LOC100506606 (Uncharacterized LOC100506606) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506606 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506606 Gene

Genomics for LOC100506606 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100506606 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J029315 Enhancer 0.9 Ensembl ENCODE 270.1 +0.9 948 3.4 CTCF CEBPB REST TRIM22 ZEB2 SMC3 RAD21 RFX5 SMARCA5 JUND LOC100506606 FAR2 MK280144-109 ERGIC2
GH12J029379 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 64.4 -63.0 -62952 3.2 CHD2 TBP SP1 CEBPA NR2C1 MNT DEK BRCA1 SMAD5 MBD2 ERGIC2 HSALNG0090099 LOC100506606 FAR2 piR-43325-022
GH12J029239 Enhancer 1.3 FANTOM5 Ensembl ENCODE 26.9 +75.8 75847 7.6 SP1 BCL11A FEZF1 CEBPA HES1 ZIC2 TRIM22 IRF4 GABPA RXRA LOC100506606 FAR2 piR-38423-012 lnc-ERGIC2-6 ERGIC2
GH12J029389 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 23.5 -72.9 -72853 3 CEBPA CEBPB FOXA2 FOSL1 FOXP1 SPI1 SOX5 ZBTB33 HLF SOX6 OVCH1-AS1 LOC100506606 ERGIC2 piR-43105-107 OVCH1
GH12J029255 Enhancer 1.1 FANTOM5 Ensembl ENCODE 25.9 +62.6 62589 2.7 REST TFDP1 NCOA1 NR2F6 ESRRA L3MBTL2 HDAC8 CEBPB ATF3 ZNF512 piR-31470-120 piR-58297-108 LOC100506606 FAR2 piR-38423-012 ERGIC2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506606 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506606 Gene

Latest Assembly
chr12:29,277,955-29,317,848
(GRCh38/hg38)
Size:
39,894 bases
Orientation:
Minus strand

Previous Assembly
chr12:29,433,348-29,470,781
(GRCh37/hg19 by Entrez Gene)
Size:
37,434 bases
Orientation:
Minus strand

chr12:29,433,351-29,470,781
(GRCh37/hg19 by Ensembl)
Size:
37,431 bases
Orientation:
Minus strand

Genomic View for LOC100506606 Gene

Genes around LOC100506606 on UCSC Golden Path with GeneCards custom track
LOC100506606 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100506606 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506606 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100506606 Gene

Proteins for LOC100506606 Gene

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Post-translational modifications for LOC100506606 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506606 Gene

Domains & Families for LOC100506606 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506606 Gene

Function for LOC100506606 Gene

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  4. Inhibitory RNAs for research
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  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506606 Gene

Localization for LOC100506606 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506606 Gene

Pathways & Interactions for LOC100506606 Gene

PathCards logo

SuperPathways for LOC100506606 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506606 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506606 Gene

Drugs & Compounds for LOC100506606 Gene

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No Compound Related Data Available

Transcripts for LOC100506606 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506606 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007D258C_9606 lncRNA 553 4

Ensembl: ENST00000612816 (view in UCSC) ,

LncBook: HSALNT0187180,

LNCipedia: lnc-ERGIC2-2:4,

NONCODE: NONHSAT163407.1,

URS000043930B_9606 lncRNA 2387 2

Ensembl: ENST00000553105 (view in UCSC) ,

LNCipedia: lnc-ERGIC2-2:1,

URS0000EF0132_9606 lncRNA 4676 1

Ensembl: ENST00000655500 (view in UCSC) ,

URS000075AC8B_9606 lncRNA 2382 1

RefSeq: NR_103860,

URS00008B6369_9606 lncRNA 2382 2

LNCipedia: lnc-ERGIC2-2:3,

NONCODE: NONHSAT027487.2,

LOC100506606 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506606 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506606 Gene

No ASD Table

Relevant External Links for LOC100506606 Gene

GeneLoc Exon Structure for
LOC100506606

Expression for LOC100506606 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506606 Gene

mRNA expression in normal human tissues for LOC100506606 Gene
mRNA expression by GTEx for LOC100506606 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506606

SOURCE GeneReport for Unigene cluster for LOC100506606 Gene:

Hs.298851
genes like me logo Genes that share expression patterns with LOC100506606: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506606 Gene

Orthologs for LOC100506606 Gene

Evolution for LOC100506606 Gene

ENSEMBL:
Gene Tree for LOC100506606 (if available)
TreeFam:
Gene Tree for LOC100506606 (if available)

No data available for Orthologs for LOC100506606 Gene

Paralogs for LOC100506606 Gene

No data available for Paralogs for LOC100506606 Gene

Variants for LOC100506606 Gene

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Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100506606 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
rs181186551 Benign: not provided 29,311,020(-) C/T
NM_001271783.2(FAR2):c.769-8C>T 		INTRON

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100506606 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100506606 Gene

Variant ID Type Subtype PubMed ID
nsv975465 CNV duplication 23825009

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506606 Gene

Disorders for LOC100506606 Gene

No disorders were found for LOC100506606 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506606 Gene

Publications for LOC100506606 Gene

  1. New gene functions in megakaryopoiesis and platelet formation. (PMID: 22139419) Gieger C … Soranzo N (Nature 2011) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100506606 Gene

Products for LOC100506606 Gene

Sources for LOC100506606 Gene