LOC100506578 Gene (Pseudogene)

Uncharacterized Protein C12orf71-Like

GC12M027591
GIFtS:
4
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Aliases for LOC100506578 Gene

Aliases for LOC100506578 Gene

  • Uncharacterized Protein C12orf71-Like 3

External Ids for LOC100506578 Gene

Previous GeneCards Identifiers for LOC100506578 Gene

  • GC12M027745

Summaries for LOC100506578 Gene

GeneCards Summary for LOC100506578 Gene

LOC100506578 (Uncharacterized Protein C12orf71-Like) is a Pseudogene.

Additional gene information for LOC100506578 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506578 Gene

Genomics for LOC100506578 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100506578 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J027588 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.6 1638 8.9 RFX1 BMI1 OSR2 NFIC GATA3 IRF4 BATF FOXA1 RFX5 HLF ENSG00000256056 LOC100506578 PPFIBP1 ARNTL2-AS1 SMCO2 lnc-MANSC4-7 ENSG00000248100 REP15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506578 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506578 Gene

Genomic Locations for LOC100506578 Gene
chr12:27,591,747-27,594,188
(GRCh38/hg38)
Size:
2,442 bases
Orientation:
Minus strand
chr12:27,745,391-27,746,972
(GRCh37/hg19)
Size:
1,582 bases
Orientation:
Minus strand

Genomic View for LOC100506578 Gene

Genes around LOC100506578 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506578 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506578 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100506578 Gene

Proteins for LOC100506578 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100506578 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506578 Gene

Domains & Families for LOC100506578 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506578 Gene

Function for LOC100506578 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100506578 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506578 Gene

Localization for LOC100506578 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506578 Gene

Pathways & Interactions for LOC100506578 Gene

PathCards logo

SuperPathways for LOC100506578 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506578 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506578 Gene

Drugs & Compounds for LOC100506578 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100506578 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506578 Gene

No ASD Table

Relevant External Links for LOC100506578 Gene

GeneLoc Exon Structure for
LOC100506578

No data available for mRNA/cDNA for LOC100506578 Gene

Expression for LOC100506578 Gene

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  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506578 Gene

mRNA expression in normal human tissues for LOC100506578 Gene
mRNA expression by GTEx for LOC100506578 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506578 Gene

This gene is overexpressed in Testis (x13.1).
genes like me logo Genes that share expression patterns with LOC100506578: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506578 Gene

Orthologs for LOC100506578 Gene

No data available for Orthologs and Evolution for LOC100506578 Gene

Paralogs for LOC100506578 Gene

No data available for Paralogs for LOC100506578 Gene

Variants for LOC100506578 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506578 Gene

Disorders for LOC100506578 Gene

No disorders were found for LOC100506578 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506578 Gene

Publications for LOC100506578 Gene

No publications were found for LOC100506578 Gene.

No data available for Mastermind for LOC100506578 Gene

Products for LOC100506578 Gene

Sources for LOC100506578 Gene