Aliases for LOC100506422 Gene

Data sources for LOC100506422 Gene:

RNA type for LOC100506422 Gene

lncRNA

Aliases for LOC100506422 Gene

External Ids for LOC100506422 Gene

Summaries for LOC100506422 Gene

GeneCards Summary for LOC100506422 Gene

LOC100506422 (Putative Deoxyuridine 5'-Triphosphate Nucleotidohydrolase-Like Protein FLJ16323) is an RNA Gene, and is affiliated with the lncRNA class. Gene Ontology (GO) annotations related to this gene include hydrolase activity.

Additional gene information for LOC100506422 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506422 Gene

Genomics for LOC100506422 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506422 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J026025 Enhancer 0.4 Ensembl ENCODE 0.3 -39.6 -39573 3.4 POU5F1 LOC100506422 piR-61514-203 HSALNG0070491 TUSC1 CAAP1
GH09J026063 Enhancer 0.2 Ensembl 0.7 -4.6 -4573 0.2 LOC100506422 HSALNG0070491 piR-61514-203 TUSC1 CAAP1
GH09J026054 Enhancer 0.3 Ensembl 0.4 -11.8 -11773 0.6 JUND LOC100506422 HSALNG0070491 piR-61514-203 TUSC1 CAAP1
GH09J026061 Enhancer 0.2 Ensembl 0.4 -5.2 -5173 0.6 LOC100506422 HSALNG0070491 piR-61514-203 TUSC1 CAAP1
GH09J026115 Enhancer 0.2 Ensembl 0.3 +49.4 49427 0.6 HSALNG0070491 LOC107987027 LOC100506422 TUSC1 CAAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506422 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC100506422

Genomic Locations for LOC100506422 Gene

Latest Assembly
chr9:26,066,674-26,118,408
(GRCh38/hg38)
Size:
51,735 bases
Orientation:
Plus strand

Previous Assembly
chr9:26,066,673-26,118,406
(GRCh37/hg19 by Entrez Gene)
Size:
51,734 bases
Orientation:
Plus strand

Genomic View for LOC100506422 Gene

Genes around LOC100506422 on UCSC Golden Path with GeneCards custom track
LOC100506422 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100506422 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506422 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506422 Gene

Proteins for LOC100506422 Gene

Post-translational modifications for LOC100506422 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506422 Gene

Domains & Families for LOC100506422 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506422 Gene

Function for LOC100506422 Gene

Phenotypes From GWAS Catalog for LOC100506422 Gene

Gene Ontology (GO) - Molecular Function for LOC100506422 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000287 magnesium ion binding IBA 21873635
GO:0004170 dUTP diphosphatase activity IBA 21873635
genes like me logo Genes that share ontologies with LOC100506422: view

Phenotypes for LOC100506422 Gene

genes like me logo Genes that share phenotypes with LOC100506422: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506422 Gene

Localization for LOC100506422 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506422 Gene

Pathways & Interactions for LOC100506422 Gene

PathCards logo

SuperPathways for LOC100506422 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506422 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006226 dUMP biosynthetic process IBA 21873635
GO:0046081 dUTP catabolic process IBA 21873635
genes like me logo Genes that share ontologies with LOC100506422: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506422 Gene

Drugs & Compounds for LOC100506422 Gene

No Compound Related Data Available

Transcripts for LOC100506422 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506422 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00007BBD79_9606 lncRNA 2320 3

RefSeq: NR_170894,

Ensembl: ENST00000612217 (view in UCSC) ,

LNCipedia: lnc-IFT74-11:1,

LOC100506422 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506422 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506422 Gene

No ASD Table

Relevant External Links for LOC100506422 Gene

GeneLoc Exon Structure for
LOC100506422

Expression for LOC100506422 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506422

SOURCE GeneReport for Unigene cluster for LOC100506422 Gene:

Hs.533221
No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506422 Gene

Orthologs for LOC100506422 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC100506422 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC743439 29
  • 98.8 (n)
Species where no ortholog for LOC100506422 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LOC100506422 Gene

ENSEMBL:
Gene Tree for LOC100506422 (if available)
TreeFam:
Gene Tree for LOC100506422 (if available)

Paralogs for LOC100506422 Gene

No data available for Paralogs for LOC100506422 Gene

Variants for LOC100506422 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100506422 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100506422 Gene

Variant ID Type Subtype PubMed ID
esv2738318 CNV deletion 23290073
esv2738319 CNV deletion 23290073
nsv1027629 CNV loss 25217958
nsv1137432 CNV deletion 24896259
nsv466324 CNV gain 19166990
nsv613923 CNV gain 21841781
nsv824894 CNV loss 20364138

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506422 Gene

Disorders for LOC100506422 Gene

Additional Disease Information for LOC100506422

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100506422 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506422 Gene

Publications for LOC100506422 Gene

  1. Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. (PMID: 30021884) Fasci D … Heck AJR (Molecular & cellular proteomics : MCP 2018) 3
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100506422 Gene

Products for LOC100506422 Gene

Sources for LOC100506422 Gene