Aliases for LOC100506406 Gene

Subcategory (RNA class) for LOC100506406 Gene

lncRNA

Aliases for LOC100506406 Gene

  • Uncharacterized LOC100506406 3

External Ids for LOC100506406 Gene

Summaries for LOC100506406 Gene

GeneCards Summary for LOC100506406 Gene

LOC100506406 (Uncharacterized LOC100506406) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506406 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506406 Gene

Genomics for LOC100506406 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506406 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J035938 Enhancer 0.6 Ensembl 600.7 0.0 -48 0.6 CREB1 RFX1 RFX5 FOXA1 PKNOX1 SP1 PBX2 SCRT2 SP2 DDX20 CAPSL ENSG00000249748 LOC100506406 RNU7-130P piR-59297-540 IL7R
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506406 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506406 Gene

Genomic Locations for LOC100506406 Gene
chr5:35,938,801-35,939,993
(GRCh38/hg38)
Size:
1,193 bases
Orientation:
Plus strand
chr5:35,938,924-35,940,095
(GRCh37/hg19)
Size:
1,172 bases
Orientation:
Plus strand

Genomic View for LOC100506406 Gene

Genes around LOC100506406 on UCSC Golden Path with GeneCards custom track
LOC100506406 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100506406 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506406 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506406 Gene

Proteins for LOC100506406 Gene

Post-translational modifications for LOC100506406 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506406 Gene

Domains & Families for LOC100506406 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506406 Gene

Function for LOC100506406 Gene

Phenotypes From GWAS Catalog for LOC100506406 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506406 Gene

Localization for LOC100506406 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506406 Gene

Pathways & Interactions for LOC100506406 Gene

PathCards logo

SuperPathways for LOC100506406 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506406 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506406 Gene

Drugs & Compounds for LOC100506406 Gene

No Compound Related Data Available

Transcripts for LOC100506406 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506406 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E6E5_9606 lncRNA 393 1

RefSeq: NR_104630,

LOC100506406 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506406 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506406 Gene

No ASD Table

Relevant External Links for LOC100506406 Gene

GeneLoc Exon Structure for
LOC100506406

Expression for LOC100506406 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506406 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506406 Gene

This gene is overexpressed in Testis (x53.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506406

SOURCE GeneReport for Unigene cluster for LOC100506406 Gene:

Hs.116864
genes like me logo Genes that share expression patterns with LOC100506406: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506406 Gene

Orthologs for LOC100506406 Gene

No data available for Orthologs and Evolution for LOC100506406 Gene

Paralogs for LOC100506406 Gene

No data available for Paralogs for LOC100506406 Gene

Variants for LOC100506406 Gene

Additional dbSNP identifiers (rs#s) for LOC100506406 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100506406 Gene

Variant ID Type Subtype PubMed ID
esv3604707 CNV gain 21293372
nsv471011 CNV gain 18288195
nsv483069 CNV gain 15286789
nsv830261 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506406 Gene

Disorders for LOC100506406 Gene

No disorders were found for LOC100506406 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506406 Gene

Publications for LOC100506406 Gene

No publications were found for LOC100506406 Gene.

No data available for Mastermind for LOC100506406 Gene

Products for LOC100506406 Gene

Sources for LOC100506406 Gene