Aliases for LOC100506271 Gene

Subcategory (RNA class) for LOC100506271 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100506271 Gene

  • Uncharacterized LOC100506271 3
  • NONHSAG033867.2 91
  • Lnc-ELFN2-1 165

External Ids for LOC100506271 Gene

Previous GeneCards Identifiers for LOC100506271 Gene

  • GC22M037749
  • GC22M037750
  • GC22M038099
  • GC22M038977
  • GC22M039337
  • GC22M040022

Summaries for LOC100506271 Gene

GeneCards Summary for LOC100506271 Gene

LOC100506271 (Uncharacterized LOC100506271) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506271 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506271 Gene

Genomics for LOC100506271 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506271 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J037353 Enhancer 0.6 Ensembl ENCODE 0.7 +2.6 2573 1.8 ESR1 POLR2A MAX RFX5 ENSG00000237862 piR-30407 piR-35817 piR-30966 piR-38815 piR-34283 piR-32176 piR-34829 piR-45423 piR-40123
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506271 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506271 Gene

Genomic Locations for LOC100506271 Gene
chr22:37,352,190-37,356,885
(GRCh38/hg38)
Size:
4,696 bases
Orientation:
Minus strand
chr22:37,748,230-37,750,879
(GRCh37/hg19)
Size:
2,650 bases
Orientation:
Minus strand

Genomic View for LOC100506271 Gene

Genes around LOC100506271 on UCSC Golden Path with GeneCards custom track
LOC100506271 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100506271 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506271 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506271 Gene

Proteins for LOC100506271 Gene

Post-translational modifications for LOC100506271 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506271 Gene

Domains & Families for LOC100506271 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506271 Gene

Function for LOC100506271 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506271 Gene

Localization for LOC100506271 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506271 Gene

Pathways & Interactions for LOC100506271 Gene

PathCards logo

SuperPathways for LOC100506271 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506271 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506271 Gene

Drugs & Compounds for LOC100506271 Gene

No Compound Related Data Available

Transcripts for LOC100506271 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506271 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000128C5D_9606 lncRNA 1965 3

RefSeq: NR_110515,

Ensembl: ENST00000445088 (view in UCSC) ,

LNCipedia: lnc-ELFN2-1:1,

URS00008BD715_9606 lncRNA 4003 2

LNCipedia: lnc-ELFN2-1:3,

NONCODE: NONHSAT085184.2,

URS00008BB5AF_9606 lncRNA 1964 1

LNCipedia: lnc-ELFN2-1:4,

URS00009C414B_9606 lncRNA 1964 1

NONCODE: NONHSAT192901.1,

URS00008BACBC_9606 lncRNA 1961 1

LNCipedia: lnc-ELFN2-1:2,

LOC100506271 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506271 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506271 Gene

No ASD Table

Relevant External Links for LOC100506271 Gene

GeneLoc Exon Structure for
LOC100506271

Expression for LOC100506271 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506271 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100506271 Gene

This gene is overexpressed in Testis (x49.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506271

SOURCE GeneReport for Unigene cluster for LOC100506271 Gene:

Hs.220558
genes like me logo Genes that share expression patterns with LOC100506271: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506271 Gene

Orthologs for LOC100506271 Gene

No data available for Orthologs and Evolution for LOC100506271 Gene

Paralogs for LOC100506271 Gene

No data available for Paralogs for LOC100506271 Gene

Variants for LOC100506271 Gene

Additional dbSNP identifiers (rs#s) for LOC100506271 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100506271 Gene

Variant ID Type Subtype PubMed ID
dgv8101n54 CNV loss 21841781
dgv8102n54 CNV loss 21841781
dgv8103n54 CNV loss 21841781
esv22685 CNV loss 19812545
esv2422033 CNV deletion 20811451
esv2675967 CNV deletion 23128226
esv3558145 CNV deletion 23714750
esv3568389 CNV loss 25503493
esv3647708 CNV loss 21293372
nsv1152015 CNV deletion 26484159
nsv471196 CNV loss 18288195
nsv528254 CNV loss 19592680
nsv588990 CNV loss 21841781
nsv588998 CNV loss 21841781
nsv589004 CNV loss 21841781
nsv817992 CNV gain 17921354
nsv829203 CNV loss 20364138
nsv834188 CNV loss 17160897
nsv834189 CNV gain+loss 17160897
nsv834190 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506271 Gene

Disorders for LOC100506271 Gene

No disorders were found for LOC100506271 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506271 Gene

Publications for LOC100506271 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100506271 Gene

Products for LOC100506271 Gene

Sources for LOC100506271 Gene