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Aliases for LOC100506258 Gene

Subcategory (RNA class) for LOC100506258 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100506258 Gene

  • Uncharacterized LOC100506258 3 5
  • CTD-2516F10.2 3
  • AC107884.1 5

External Ids for LOC100506258 Gene

Previous GeneCards Identifiers for LOC100506258 Gene

  • GC11M007458

Summaries for LOC100506258 Gene

GeneCards Summary for LOC100506258 Gene

LOC100506258 (Uncharacterized LOC100506258) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100506258 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506258 Gene

Genomics for LOC100506258 Gene

GeneHancer (GH) Regulatory Elements for LOC100506258 Gene

Promoters and enhancers for LOC100506258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J007511 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 575.8 -0.4 -414 3.7 SPI1 SP1 MNT ZFX CBFA2T2 IRF5 MLLT1 ZNF687 L3MBTL2 SMARCA4 LOC100506258 PPFIBP2 ILK OLFML1 GC11M007514
GH11J007518 Enhancer 1.3 Ensembl ENCODE dbSUPER 26.6 -10.0 -9984 7.2 SPI1 FOXA1 NR2F6 SP1 ZFX MLLT1 ZNF687 ZNF24 RAD21 RELA LOC100506258 ENSG00000254864 OLFML1 PPFIBP2 GC11M007514 GC11M007541
GH11J006654 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE 10.5 +856.8 856756 3 NR2F6 PRDM1 IKZF1 ZNF600 ZNF512 POLR2A SOX13 MTA2 ZNF184 ZBTB26 DCHS1 RRP8 FAM160A2 ENSG00000254641 LOC100506258 ENSG00000254595 ILK APBB1 OR2D2 TRIM3
GH11J006925 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 9.8 +585.8 585793 2.3 DACH1 SPI1 ZFX GTF2F1 MLLT1 L3MBTL2 PRDM1 SMARCA4 TRIM24 IKZF1 ZNF215 OR2AG2 ENSG00000283415 OLFML1 RRP8 ENSG00000254595 LOC100506258
GH11J007484 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 9.8 +27.2 27180 1.9 SP1 HNF4A HNF4G KDM1A RXRA OLFML1 LOC100506258 GC11M007483 GC11M007460
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506258 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506258 Gene

Genomic Locations for LOC100506258 Gene
chr11:7,427,266-7,512,515
(GRCh38/hg38)
Size:
85,250 bases
Orientation:
Minus strand
chr11:7,448,497-7,533,746
(GRCh37/hg19)
Size:
85,250 bases
Orientation:
Minus strand

Genomic View for LOC100506258 Gene

Genes around LOC100506258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506258 Gene

Proteins for LOC100506258 Gene

Post-translational modifications for LOC100506258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506258 Gene

Domains & Families for LOC100506258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506258 Gene

Function for LOC100506258 Gene

Phenotypes From GWAS Catalog for LOC100506258 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506258 Gene

Localization for LOC100506258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506258 Gene

Pathways & Interactions for LOC100506258 Gene

SuperPathways for LOC100506258 Gene

No Data Available

Interacting Proteins for LOC100506258 Gene

Gene Ontology (GO) - Biological Process for LOC100506258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100506258 Gene

Drugs & Compounds for LOC100506258 Gene

No Compound Related Data Available

Transcripts for LOC100506258 Gene

mRNA/cDNA for LOC100506258 Gene

(4) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) RNA Central transcripts :

Unigene Clusters for LOC100506258 Gene

Uncharacterized LOC100506258:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506258 Gene

No ASD Table

Relevant External Links for LOC100506258 Gene

GeneLoc Exon Structure for
LOC100506258

Expression for LOC100506258 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506258 Gene

SOURCE GeneReport for Unigene cluster for LOC100506258 Gene:

Hs.661614
genes like me logo Genes that share expression patterns with LOC100506258: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506258 Gene

Orthologs for LOC100506258 Gene

Evolution for LOC100506258 Gene

ENSEMBL:
Gene Tree for LOC100506258 (if available)
TreeFam:
Gene Tree for LOC100506258 (if available)

No data available for Orthologs for LOC100506258 Gene

Paralogs for LOC100506258 Gene

No data available for Paralogs for LOC100506258 Gene

Variants for LOC100506258 Gene

Sequence variations from dbSNP and Humsavar for LOC100506258 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000091370 -- 7,445,957(-) C/A intron_variant
rs1000481048 -- 7,447,614(-) A/C/G intron_variant
rs1000583234 -- 7,464,088(-) C/T intron_variant
rs1000674150 -- 7,437,424(-) T/C downstream_transcript_variant
rs1000750679 -- 7,465,841(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100506258 Gene

Variant ID Type Subtype PubMed ID
dgv319e212 CNV loss 25503493
esv3579331 CNV loss 25503493
esv3579332 CNV loss 25503493
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506258 Gene

Disorders for LOC100506258 Gene

Additional Disease Information for LOC100506258

No disorders were found for LOC100506258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506258 Gene

Publications for LOC100506258 Gene

  1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100506258 Gene

Sources for LOC100506258 Gene

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