Aliases for LOC100506258 Gene

Subcategory (RNA class) for LOC100506258 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LOC100506258 Gene

  • Uncharacterized LOC100506258 3
  • NONHSAG007561.2 91
  • CTD-2516F10.2 3
  • HSALNG0082493 164
  • Lnc-CYB5R2-3 165

External Ids for LOC100506258 Gene

Previous GeneCards Identifiers for LOC100506258 Gene

  • GC11M007458
  • GC11M007427
  • GC11M007437

Summaries for LOC100506258 Gene

GeneCards Summary for LOC100506258 Gene

LOC100506258 (Uncharacterized LOC100506258) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506258 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506258 Gene

Genomics for LOC100506258 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J007511 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.3 307 4.5 SP1 HNRNPL CTCF TFE3 NFKBIZ POLR2A BACH1 LARP7 STAT3 ZNF143 ENSG00000251364 LOC100506258 MN297029 PPFIBP2 ILK OLFML1 lnc-CYB5R2-6 CYB5R2
GH11J007484 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +27.7 27746 3 TEAD4 SP1 NFIC HNF4A RXRA KDM1A HNF4G EZH2 OLFML1 ENSG00000251364 MN297029 PPFIBP2 LOC100506258
GH11J007494 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +18.1 18141 8.6 IKZF2 SOX13 DPF2 TCF12 GABPA ELF1 NFIC NBN NR2F1 CEBPG ILK ENSG00000251364 OLFML1 MN297029 LOC100506258 PPFIBP2
GH11J007506 Enhancer 0.4 Ensembl 0.4 +7.2 7241 0.4 MTA2 SPI1 IKZF1 OLFML1 ENSG00000251364 PPFIBP2 MN297029 LOC100506258
GH11J007490 Enhancer 0.4 Ensembl ENCODE 0.4 +23.5 23542 1.8 CEBPB OLFML1 ENSG00000251364 PPFIBP2 LOC100506258 MN297029
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506258 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506258 Gene

Genomic Locations for LOC100506258 Gene
chr11:7,383,842-7,513,642
(GRCh38/hg38)
Size:
129,801 bases
Orientation:
Minus strand
chr11:7,448,497-7,533,746
(GRCh37/hg19)
Size:
85,250 bases
Orientation:
Minus strand

Genomic View for LOC100506258 Gene

Genes around LOC100506258 on UCSC Golden Path with GeneCards custom track
LOC100506258 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100506258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506258 Gene

Proteins for LOC100506258 Gene

Post-translational modifications for LOC100506258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506258 Gene

Domains & Families for LOC100506258 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506258 Gene

Function for LOC100506258 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506258 Gene

Localization for LOC100506258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506258 Gene

Pathways & Interactions for LOC100506258 Gene

PathCards logo

SuperPathways for LOC100506258 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506258 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506258 Gene

Drugs & Compounds for LOC100506258 Gene

No Compound Related Data Available

Transcripts for LOC100506258 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506258 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A6FA_9606 lncRNA 4508 2

RefSeq: NR_103855,

LNCipedia: lnc-CYB5R2-3:21,

URS00008BFF89_9606 lncRNA 2703 3

LncBook: HSALNT0171614,

LNCipedia: lnc-CYB5R2-3:13,

NONCODE: NONHSAT160049.1,

URS00008B32BF_9606 lncRNA 4498 2

LNCipedia: lnc-CYB5R2-3:12,

NONCODE: NONHSAT017779.2,

URS00008BB8D4_9606 lncRNA 3807 2

LNCipedia: lnc-CYB5R2-3:11,

NONCODE: NONHSAT017773.2,

URS0000D5DA1C_9606 lncRNA 9819 1

LNCipedia: lnc-CYB5R2-3:20,

LOC100506258 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506258 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506258 Gene

No ASD Table

Relevant External Links for LOC100506258 Gene

GeneLoc Exon Structure for
LOC100506258

Expression for LOC100506258 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506258 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506258

SOURCE GeneReport for Unigene cluster for LOC100506258 Gene:

Hs.661614
genes like me logo Genes that share expression patterns with LOC100506258: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506258 Gene

Orthologs for LOC100506258 Gene

No data available for Orthologs and Evolution for LOC100506258 Gene

Paralogs for LOC100506258 Gene

No data available for Paralogs for LOC100506258 Gene

Variants for LOC100506258 Gene

Additional dbSNP identifiers (rs#s) for LOC100506258 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100506258 Gene

Variant ID Type Subtype PubMed ID
dgv319e212 CNV loss 25503493
esv3579331 CNV loss 25503493
esv3579332 CNV loss 25503493
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506258 Gene

Disorders for LOC100506258 Gene

No disorders were found for LOC100506258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506258 Gene

Publications for LOC100506258 Gene

  1. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100506258 Gene

Products for LOC100506258 Gene

Sources for LOC100506258 Gene