Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100506248 Gene

Aliases for LOC100506248 Gene

  • Prothymosin Alpha 3
  • AC007537.1 5

External Ids for LOC100506248 Gene

Previous GeneCards Identifiers for LOC100506248 Gene

  • GC12P012266
  • GC12U902212

Summaries for LOC100506248 Gene

GeneCards Summary for LOC100506248 Gene

LOC100506248 (Prothymosin Alpha) is a Protein Coding gene. Among its related pathways are Epstein-Barr virus infection.

Additional gene information for LOC100506248 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506248 Gene

Genomics for LOC100506248 Gene

GeneHancer (GH) Regulatory Elements for LOC100506248 Gene

Promoters and enhancers for LOC100506248 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I012111 Promoter 0.5 Ensembl 550.8 +0.3 299 0.6 LOC100506248 MIR1244-4 BCL2L14
GH12I012265 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.3 +155.5 155526 3.1 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 LRP6 DDX47 LOC100506248 ENSG00000255670 LOH12CR2 RPL13AP20 GC12P012248
GH12I012356 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.6 +246.8 246771 2.9 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF213 ZNF207 LOH12CR2 BORCS5 LRP6 LOC100506248 DDX47 MANSC1 PIR62067 GC12P012340
GH12I012834 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.1 +727.6 727581 8.9 PKNOX1 SIN3A FEZF1 ZNF2 BRCA1 GTF3C2 ZNF121 GLIS2 KLF7 FOS DDX47 GPRC5A LOC100506248 MIR614 ENSG00000256011 GPRC5D-AS1 GPRC5D LRP6 RPL13AP20 GC12P012833
GH12I012396 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.4 +287.9 287870 3.9 FOXA2 ARID4B SIN3A FEZF1 ZNF2 YY1 FOS KLF13 SP3 SP5 DDX47 HTR7P1 LRP6 CREBL2 GPR19 ENSG00000240424 DUSP16 LOC100506248 MANSC1 CDKN1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100506248 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506248 Gene

Genomic Locations for LOC100506248 Gene
chr12:12,111,002-12,111,688
(GRCh38/hg38)
Size:
687 bases
Orientation:
Plus strand
chr12:12,264,097-12,264,453
(GRCh37/hg19)

Genomic View for LOC100506248 Gene

Genes around LOC100506248 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506248 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506248 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506248 Gene

Proteins for LOC100506248 Gene

Post-translational modifications for LOC100506248 Gene

No Post-translational modifications

Other Protein References for LOC100506248 Gene

No data available for DME Specific Peptides for LOC100506248 Gene

Domains & Families for LOC100506248 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506248 Gene

Function for LOC100506248 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506248 Gene

Localization for LOC100506248 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506248 Gene

Pathways & Interactions for LOC100506248 Gene

SuperPathways for LOC100506248 Gene

SuperPathway Contained pathways
1 Epstein-Barr virus infection
genes like me logo Genes that share pathways with LOC100506248: view

Pathways by source for LOC100506248 Gene

1 KEGG pathway for LOC100506248 Gene

Interacting Proteins for LOC100506248 Gene

Gene Ontology (GO) - Biological Process for LOC100506248 Gene

None

No data available for SIGNOR curated interactions for LOC100506248 Gene

Drugs & Compounds for LOC100506248 Gene

No Compound Related Data Available

Transcripts for LOC100506248 Gene

mRNA/cDNA for LOC100506248 Gene

(3) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506248 Gene

No ASD Table

Relevant External Links for LOC100506248 Gene

GeneLoc Exon Structure for
LOC100506248

Expression for LOC100506248 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506248 Gene

genes like me logo Genes that share expression patterns with LOC100506248: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506248 Gene

Orthologs for LOC100506248 Gene

Evolution for LOC100506248 Gene

ENSEMBL:
Gene Tree for LOC100506248 (if available)
TreeFam:
Gene Tree for LOC100506248 (if available)

No data available for Orthologs for LOC100506248 Gene

Paralogs for LOC100506248 Gene

No data available for Paralogs for LOC100506248 Gene

Variants for LOC100506248 Gene

Sequence variations from dbSNP and Humsavar for LOC100506248 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1004233338 -- 12,111,260(+) C/T coding_sequence_variant, missense_variant
rs1004300744 -- 12,111,303(+) G/A coding_sequence_variant, synonymous_variant
rs1005301138 -- 12,110,002(+) C/T upstream_transcript_variant
rs1005412755 -- 12,109,668(+) T/C upstream_transcript_variant
rs1005415536 -- 12,110,282(+) T/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100506248 Gene

Disorders for LOC100506248 Gene

No disorders were found for LOC100506248 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506248 Gene

Publications for LOC100506248 Gene

No publications were found for LOC100506248 Gene.

Products for LOC100506248 Gene

Sources for LOC100506248 Gene

Content
Loading form....