Aliases for LOC100506188 Gene

Subcategory (RNA class) for LOC100506188 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100506188 Gene

  • Uncharacterized LOC100506188 3
  • NONHSAG044009.2 91
  • Lnc-RAB23-1 165

External Ids for LOC100506188 Gene

Previous GeneCards Identifiers for LOC100506188 Gene

  • GC06M057126

Summaries for LOC100506188 Gene

GeneCards Summary for LOC100506188 Gene

LOC100506188 (Uncharacterized LOC100506188) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506188 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506188 Gene

Genomics for LOC100506188 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506188 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J057261 Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 -1.4 -1350 8.2 GATAD2A CTCF ATF7 TEAD4 RFX1 REST RAD21 FOXJ2 MNT JUND LOC100506188 BAG2 ZNF451-AS1 BEND6 lnc-RAB23-7 HSALNG0050818 RAB23 PRIM2
GH06J057257 Enhancer 0.7 FANTOM5 ENCODE dbSUPER 0.7 +4.8 4815 2.4 RNF2 CEBPB BAG2 ZNF451-AS1 RAB23 KIAA1586 LOC100506188 MG828702 lnc-RAB23-7 PRIM2
GH06J057252 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +9.8 9846 2.2 FOXA1 FOXK2 FOXA2 TEAD1 WT1 SPI1 PRDM4 ZNF843 TEAD3 FOXA3 ZNF451-AS1 BAG2 MG828702 LOC100506188 lnc-RAB23-7 RAB23 PRIM2
GH06J057256 Enhancer 0.6 ENCODE dbSUPER 0.4 +6.6 6608 0.1 PRDM1 ZSCAN4 FOXJ2 MCM3 MEF2D PRIM2 ZNF451-AS1 BAG2 LOC100506188 MG828702 lnc-RAB23-7 RAB23
GH06J057258 Enhancer 0.4 ENCODE dbSUPER 0.4 +6.2 6169 0.2 CEBPB ZNF451-AS1 BAG2 PRIM2 LOC100506188 MG828702 lnc-RAB23-7 RAB23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506188 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506188 Gene

Genomic Locations for LOC100506188 Gene
chr6:57,260,524-57,263,347
(GRCh38/hg38)
Size:
2,824 bases
Orientation:
Minus strand
chr6:57,125,235-57,128,144
(GRCh37/hg19)
Size:
2,910 bases
Orientation:
Minus strand

Genomic View for LOC100506188 Gene

Genes around LOC100506188 on UCSC Golden Path with GeneCards custom track
LOC100506188 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100506188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506188 Gene

Proteins for LOC100506188 Gene

Post-translational modifications for LOC100506188 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506188 Gene

Domains & Families for LOC100506188 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506188 Gene

Function for LOC100506188 Gene

Phenotypes From GWAS Catalog for LOC100506188 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506188 Gene

Localization for LOC100506188 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506188 Gene

Pathways & Interactions for LOC100506188 Gene

PathCards logo

SuperPathways for LOC100506188 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506188 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506188 Gene

Drugs & Compounds for LOC100506188 Gene

No Compound Related Data Available

Transcripts for LOC100506188 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506188 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B82C_9606 lncRNA 1460 3

RefSeq: NR_109774,

LNCipedia: lnc-RAB23-1:3,

NONCODE: NONHSAT113288.2,

URS00008BC23E_9606 lncRNA 1417 2

LNCipedia: lnc-RAB23-1:2,

NONCODE: NONHSAT113289.2,

URS00009B28BB_9606 lncRNA 1469 1

NONCODE: NONHSAT209245.1,

URS00008B771E_9606 lncRNA 1458 1

LNCipedia: lnc-RAB23-1:1,

URS0000D5D43C_9606 lncRNA 1062 1

LNCipedia: lnc-RAB23-1:5,

LOC100506188 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506188 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506188 Gene

No ASD Table

Relevant External Links for LOC100506188 Gene

GeneLoc Exon Structure for
LOC100506188

Expression for LOC100506188 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506188

SOURCE GeneReport for Unigene cluster for LOC100506188 Gene:

Hs.485640
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506188 Gene

Orthologs for LOC100506188 Gene

No data available for Orthologs and Evolution for LOC100506188 Gene

Paralogs for LOC100506188 Gene

No data available for Paralogs for LOC100506188 Gene

Variants for LOC100506188 Gene

Additional dbSNP identifiers (rs#s) for LOC100506188 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100506188 Gene

Variant ID Type Subtype PubMed ID
esv3571094 CNV loss 25503493
esv3609117 CNV gain 21293372
esv3609118 CNV gain 21293372
nsv1034095 CNV loss 25217958
nsv528165 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506188 Gene

Disorders for LOC100506188 Gene

No disorders were found for LOC100506188 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100506188 Gene

Publications for LOC100506188 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC100506188 Gene

Products for LOC100506188 Gene

Sources for LOC100506188 Gene