Aliases for LOC100506100 Gene

Data sources for LOC100506100 Gene:

RNA type for LOC100506100 Gene

lncRNA

Aliases for LOC100506100 Gene

External Ids for LOC100506100 Gene

Previous GeneCards Identifiers for LOC100506100 Gene

  • GC09P131487

Summaries for LOC100506100 Gene

GeneCards Summary for LOC100506100 Gene

LOC100506100 (Uncharacterized LOC100506100) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100506100 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100506100 Gene

Genomics for LOC100506100 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100506100 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506100 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100506100 Gene

Latest Assembly
chr9:128,724,325-128,733,398
(GRCh38/hg38)
Size:
9,074 bases
Orientation:
Plus strand

Previous Assembly
chr9:131,486,741-131,495,522
(GRCh37/hg19 by Entrez Gene)
Size:
8,782 bases
Orientation:
Plus strand

chr9:131,486,724-131,495,473
(GRCh37/hg19 by Ensembl)
Size:
8,750 bases
Orientation:
Plus strand

Genomic View for LOC100506100 Gene

Genes around LOC100506100 on UCSC Golden Path with GeneCards custom track
LOC100506100 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100506100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506100 Gene

Proteins for LOC100506100 Gene

Post-translational modifications for LOC100506100 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506100 Gene

Domains & Families for LOC100506100 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100506100 Gene

Function for LOC100506100 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506100 Gene

Localization for LOC100506100 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506100 Gene

Pathways & Interactions for LOC100506100 Gene

PathCards logo

SuperPathways for LOC100506100 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100506100 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100506100 Gene

Drugs & Compounds for LOC100506100 Gene

No Compound Related Data Available

Transcripts for LOC100506100 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100506100 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075A487_9606 lncRNA 578 3

RefSeq: NR_046240,

LNCipedia: lnc-PKN3-1:2,

NONCODE: NONHSAT134987.2,

URS000060754C_9606 lncRNA 544 2

Ensembl: ENST00000443631 (view in UCSC) ,

LNCipedia: lnc-PKN3-1:1, lnc-PKN3-1:7,

URS00008B9CDE_9606 lncRNA 916 2

LNCipedia: lnc-PKN3-1:3,

NONCODE: NONHSAT134988.2,

URS0000D5BBB8_9606 lncRNA 779 2

LncBook: HSALNT0155781,

LNCipedia: lnc-PKN3-1:8,

URS00009B9AA3_9606 lncRNA 597 2

LncBook: HSALNT0155783,

NONCODE: NONHSAT220239.1,

LOC100506100 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100506100 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506100 Gene

No ASD Table

Relevant External Links for LOC100506100 Gene

GeneLoc Exon Structure for
LOC100506100

Expression for LOC100506100 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100506100 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100506100

SOURCE GeneReport for Unigene cluster for LOC100506100 Gene:

Hs.62946
genes like me logo Genes that share expression patterns with LOC100506100: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506100 Gene

Orthologs for LOC100506100 Gene

Evolution for LOC100506100 Gene

ENSEMBL:
Gene Tree for LOC100506100 (if available)
TreeFam:
Gene Tree for LOC100506100 (if available)

No data available for Orthologs for LOC100506100 Gene

Paralogs for LOC100506100 Gene

No data available for Paralogs for LOC100506100 Gene

Variants for LOC100506100 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100506100 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100506100 Gene

Variant ID Type Subtype PubMed ID
nsv615411 CNV loss 21841781
nsv951777 CNV deletion 24416366

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100506100 Gene

Disorders for LOC100506100 Gene

Additional Disease Information for LOC100506100

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100506100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100506100 Gene

Publications for LOC100506100 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100506100 Gene

Products for LOC100506100 Gene

Sources for LOC100506100 Gene