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Aliases for LOC100506083 Gene

Subcategory (RNA class) for LOC100506083 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100506083 Gene

  • Uncharacterized LOC100506083 3
  • AC012184.3 5

External Ids for LOC100506083 Gene

Summaries for LOC100506083 Gene

GeneCards Summary for LOC100506083 Gene

LOC100506083 (Uncharacterized LOC100506083) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC100506083 include Prostate Cancer.

Additional gene information for LOC100506083 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100506083 Gene

Genomics for LOC100506083 Gene

GeneHancer (GH) Regulatory Elements for LOC100506083 Gene

Promoters and enhancers for LOC100506083 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J070345 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 664.2 -0.4 -391 2.7 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B LOC100506083 DDX19A EXOSC6 NONOP1 DDX19B SF3B3 NFAT5 PDPR COG4 PDXDC2P-NPIPB14P
GH16J070346 Enhancer 0.5 ENCODE 650.7 +1.1 1094 0.2 CREB1 MAFG NFE2 RXRB NFE2L2 DDX19A LOC100506083 EXOSC6 PIR35247 ENSG00000260537
GH16J070287 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.3 +57.3 57288 4.1 PKNOX1 SMAD1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B DDX19B AARS PDPR NONOP1 NFAT5 SF3B3 COG4 SMG1P7 LOC400541 COG8
GH16J070298 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.6 +47.4 47403 1.7 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ENSG00000260537 DDX19B COG4 LOC100506083 NPIPB14P PIR35247
GH16J070250 Promoter/Enhancer 1.6 Ensembl ENCODE 12.5 +95.2 95213 2.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 NFYC SSRP1 EXOSC6 COG4 DDX19B NONOP1 SF3B3 PDPR NFAT5 PDXDC2P-NPIPB14P PDXDC2P NPIPB14P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100506083 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100506083 Gene

Genomic Locations for LOC100506083 Gene
chr16:70,315,640-70,346,747
(GRCh38/hg38)
Size:
31,108 bases
Orientation:
Minus strand
chr16:70,349,543-70,380,650
(GRCh37/hg19)
Size:
31,108 bases
Orientation:
Minus strand

Genomic View for LOC100506083 Gene

Genes around LOC100506083 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100506083 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100506083 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100506083 Gene

Proteins for LOC100506083 Gene

Post-translational modifications for LOC100506083 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100506083 Gene

Domains & Families for LOC100506083 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100506083 Gene

Function for LOC100506083 Gene

Phenotypes From GWAS Catalog for LOC100506083 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100506083 Gene

Localization for LOC100506083 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100506083 Gene

Pathways & Interactions for LOC100506083 Gene

SuperPathways for LOC100506083 Gene

No Data Available

Interacting Proteins for LOC100506083 Gene

Gene Ontology (GO) - Biological Process for LOC100506083 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100506083 Gene

Drugs & Compounds for LOC100506083 Gene

No Compound Related Data Available

Transcripts for LOC100506083 Gene

mRNA/cDNA for LOC100506083 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100506083 Gene

Uncharacterized LOC100506083:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100506083 Gene

No ASD Table

Relevant External Links for LOC100506083 Gene

GeneLoc Exon Structure for
LOC100506083

Expression for LOC100506083 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100506083 Gene

SOURCE GeneReport for Unigene cluster for LOC100506083 Gene:

Hs.635008
genes like me logo Genes that share expression patterns with LOC100506083: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100506083 Gene

Orthologs for LOC100506083 Gene

Evolution for LOC100506083 Gene

ENSEMBL:
Gene Tree for LOC100506083 (if available)
TreeFam:
Gene Tree for LOC100506083 (if available)

No data available for Orthologs for LOC100506083 Gene

Paralogs for LOC100506083 Gene

No data available for Paralogs for LOC100506083 Gene

Variants for LOC100506083 Gene

Sequence variations from dbSNP and Humsavar for LOC100506083 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000019418 -- 70,337,966(-) G/C intron_variant
rs1000108116 -- 70,328,796(-) G/T intron_variant
rs1000152214 -- 70,320,966(-) /C intron_variant
rs1000162255 -- 70,320,720(-) A/G intron_variant
rs1000367411 -- 70,323,039(-) G/A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100506083 Gene

Variant ID Type Subtype PubMed ID
esv2714670 CNV deletion 23290073
nsv7285 OTHER inversion 18451855
nsv833271 CNV gain+loss 17160897
nsv833272 CNV loss 17160897
nsv977994 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100506083 Gene

Disorders for LOC100506083 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC100506083 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
prostate cancer
  • prostate cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC100506083

genes like me logo Genes that share disorders with LOC100506083: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC100506083 Gene

Publications for LOC100506083 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100506083 Gene

Sources for LOC100506083 Gene

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