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Aliases for LOC100505921 Gene

Subcategory (RNA class) for LOC100505921 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100505921 Gene

  • Uncharacterized LOC100505921 3
  • AC006042.2 5

External Ids for LOC100505921 Gene

Previous GeneCards Identifiers for LOC100505921 Gene

  • GC07M008035

Summaries for LOC100505921 Gene

GeneCards Summary for LOC100505921 Gene

LOC100505921 (Uncharacterized LOC100505921) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC100505921 include Glucocorticoid Therapy, Response To.

Additional gene information for LOC100505921 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100505921 Gene

Genomics for LOC100505921 Gene

GeneHancer (GH) Regulatory Elements for LOC100505921 Gene

Promoters and enhancers for LOC100505921 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J007967 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.2 -222 5.6 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF2 IRF4 YY1 SLC30A9 POLR2B LOC100505921 GLCCI1 LOC100421597 ENSG00000283549 UMAD1
GH07J007943 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.6 +24.8 24762 2.9 HDGF PKNOX1 STAT5A BMI1 BATF KLF5 IRF4 ATF7 ETV6 BCLAF1 PIR33188 ENSG00000234141 GLCCI1 LOC100505921 ENSG00000283549 UMAD1
GH07J007794 Enhancer 1.1 Ensembl ENCODE 10.4 +172.9 172873 5.8 PKNOX1 FOXA2 SIN3A FEZF1 TCF12 ZNF766 ELK1 FOS REST ATF4 GLCCI1 LOC100505921 RPL23AP51 RNU6-534P ENSG00000283549 UMAD1
GH07J007815 Enhancer 1 Ensembl ENCODE 11.1 +153.5 153468 1.9 SMAD1 STAT5A BMI1 BATF IRF4 RELA POLR2A NFATC1 EED ATF7 GLCCI1 LOC100505921 RPL23AP51 RNU6-534P ENSG00000283549 UMAD1
GH07J007731 Enhancer 1 Ensembl ENCODE 10.3 +237.4 237436 2.6 ELF3 FOXA2 MLX ARID4B FEZF1 THRB RARA SLC30A9 ZNF335 CREM GLCCI1 LOC100505921 RPL23AP51 RPA3 LOC100533631 ENSG00000283549 UMAD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100505921 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100505921 Gene

Genomic Locations for LOC100505921 Gene
chr7:7,949,839-7,969,903
(GRCh38/hg38)
Size:
20,065 bases
Orientation:
Minus strand
chr7:7,997,814-8,009,534
(GRCh37/hg19)
Size:
11,721 bases
Orientation:
Minus strand

Genomic View for LOC100505921 Gene

Genes around LOC100505921 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505921 Gene

Proteins for LOC100505921 Gene

Post-translational modifications for LOC100505921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505921 Gene

Domains & Families for LOC100505921 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100505921 Gene

Function for LOC100505921 Gene

Phenotypes From GWAS Catalog for LOC100505921 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505921 Gene

Localization for LOC100505921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505921 Gene

Pathways & Interactions for LOC100505921 Gene

SuperPathways for LOC100505921 Gene

No Data Available

Interacting Proteins for LOC100505921 Gene

Gene Ontology (GO) - Biological Process for LOC100505921 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505921 Gene

Drugs & Compounds for LOC100505921 Gene

No Compound Related Data Available

Transcripts for LOC100505921 Gene

mRNA/cDNA for LOC100505921 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100505921 Gene

Uncharacterized LOC100505921:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505921 Gene

No ASD Table

Relevant External Links for LOC100505921 Gene

GeneLoc Exon Structure for
LOC100505921

Expression for LOC100505921 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505921 Gene

SOURCE GeneReport for Unigene cluster for LOC100505921 Gene:

Hs.634989
genes like me logo Genes that share expression patterns with LOC100505921: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505921 Gene

Orthologs for LOC100505921 Gene

Evolution for LOC100505921 Gene

ENSEMBL:
Gene Tree for LOC100505921 (if available)
TreeFam:
Gene Tree for LOC100505921 (if available)

No data available for Orthologs for LOC100505921 Gene

Paralogs for LOC100505921 Gene

No data available for Paralogs for LOC100505921 Gene

Variants for LOC100505921 Gene

Sequence variations from dbSNP and Humsavar for LOC100505921 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs37973 drug-response, Glucocorticoid therapy, response to 7,968,245(-) G/A intron_variant
rs1000017711 -- 7,963,625(-) G/C intron_variant
rs1000122046 -- 7,966,216(-) A/C intron_variant
rs1000172364 -- 7,955,954(-) T/C non_coding_transcript_variant
rs1000392706 -- 7,956,330(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505921 Gene

Variant ID Type Subtype PubMed ID
nsv606048 CNV loss 21841781
nsv525502 CNV loss 19592680
nsv1030180 CNV loss 25217958
esv3440301 CNV insertion 20981092
esv2761144 CNV gain+loss 21179565
esv2752177 CNV gain 17911159
dgv6249n100 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100505921 Gene

Disorders for LOC100505921 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC100505921 Gene - From: GeneCards

Disorder Aliases PubMed IDs
glucocorticoid therapy, response to
  • gctr
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC100505921

genes like me logo Genes that share disorders with LOC100505921: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC100505921 Gene

Publications for LOC100505921 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 58

Products for LOC100505921 Gene

Sources for LOC100505921 Gene

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