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Aliases for LOC100505921 Gene

Subcategory (RNA class) for LOC100505921 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100505921 Gene

  • Uncharacterized LOC100505921 3
  • AC006042.2 5

External Ids for LOC100505921 Gene

Previous GeneCards Identifiers for LOC100505921 Gene

  • GC07M008035

Summaries for LOC100505921 Gene

GeneCards Summary for LOC100505921 Gene

LOC100505921 (Uncharacterized LOC100505921) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100505921 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100505921 Gene

Genomics for LOC100505921 Gene

GeneHancer (GH) Regulatory Elements for LOC100505921 Gene

Promoters and enhancers for LOC100505921 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I007967 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.2 -222 5.6 HDGF PKNOX1 ZFP64 ARID4B SIN3A ZNF2 IRF4 YY1 SLC30A9 POLR2B GLCCI1 LOC100505921 LOC100421597 ENSG00000283549 UMAD1
GH07I007943 Enhancer 1.2 FANTOM5 Ensembl ENCODE 11.6 +24.8 24762 2.9 HDGF PKNOX1 BMI1 BATF KLF5 IRF4 ATF7 ETV6 BCLAF1 IKZF2 PIR33188 ENSG00000234141 GLCCI1 LOC100505921 ENSG00000283549 UMAD1
GH07I007794 Enhancer 1.1 Ensembl ENCODE 10.4 +172.9 172873 5.8 PKNOX1 FOXA2 SIN3A FEZF1 TCF12 ZNF766 ELK1 FOS REST ATF4 GLCCI1 LOC100505921 RPL23AP51 RNU6-534P UMAD1 ENSG00000283549
GH07I007761 Enhancer 1 Ensembl ENCODE 10.7 +207.8 207777 2.2 MEIS2 CTCF IRF2 PKNOX1 RB1 RAD21 RFX5 FOSL1 CTBP1 ZNF766 GLCCI1 LOC100505921 RPL23AP51 UMAD1 ENSG00000283549 RNU6-534P
GH07I008201 Enhancer 1 ENCODE dbSUPER 10.3 -232.0 -232023 0.2 HDAC1 PKNOX1 TEAD4 TAL1 E4F1 CCNT2 TCF12 CTBP1 GATA2 POLR2A GLCCI1 LOC100505921 GC07P008190 LOC100505938 ICA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100505921 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100505921 Gene

Genomic Locations for LOC100505921 Gene
chr7:7,949,839-7,969,903
(GRCh38/hg38)
Size:
20,065 bases
Orientation:
Minus strand
chr7:7,997,814-8,009,534
(GRCh37/hg19)

Genomic View for LOC100505921 Gene

Genes around LOC100505921 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505921 Gene

Proteins for LOC100505921 Gene

Post-translational modifications for LOC100505921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505921 Gene

Domains & Families for LOC100505921 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100505921 Gene

Function for LOC100505921 Gene

Phenotypes From GWAS Catalog for LOC100505921 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505921 Gene

Localization for LOC100505921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505921 Gene

Pathways & Interactions for LOC100505921 Gene

SuperPathways for LOC100505921 Gene

No Data Available

Interacting Proteins for LOC100505921 Gene

Gene Ontology (GO) - Biological Process for LOC100505921 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505921 Gene

Drugs & Compounds for LOC100505921 Gene

No Compound Related Data Available

Transcripts for LOC100505921 Gene

mRNA/cDNA for LOC100505921 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100505921 Gene

Uncharacterized LOC100505921:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505921 Gene

No ASD Table

Relevant External Links for LOC100505921 Gene

GeneLoc Exon Structure for
LOC100505921

Expression for LOC100505921 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505921 Gene

SOURCE GeneReport for Unigene cluster for LOC100505921 Gene:

Hs.634989
genes like me logo Genes that share expression patterns with LOC100505921: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505921 Gene

Orthologs for LOC100505921 Gene

Evolution for LOC100505921 Gene

ENSEMBL:
Gene Tree for LOC100505921 (if available)
TreeFam:
Gene Tree for LOC100505921 (if available)

No data available for Orthologs for LOC100505921 Gene

Paralogs for LOC100505921 Gene

No data available for Paralogs for LOC100505921 Gene

Variants for LOC100505921 Gene

Sequence variations from dbSNP and Humsavar for LOC100505921 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs37973 drug-response, Glucocorticoid therapy, response to 7,968,245(-) G/A intron_variant
rs1000017711 -- 7,963,625(-) G/C intron_variant
rs1000122046 -- 7,966,216(-) A/C intron_variant
rs1000172364 -- 7,955,954(-) T/C non_coding_transcript_variant
rs1000392706 -- 7,956,330(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505921 Gene

Variant ID Type Subtype PubMed ID
dgv6249n100 CNV gain 25217958
esv2752177 CNV gain 17911159
esv2761144 CNV gain+loss 21179565
esv3440301 CNV insertion 20981092
nsv1030180 CNV loss 25217958
nsv525502 CNV loss 19592680
nsv606048 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100505921 Gene

Disorders for LOC100505921 Gene

Additional Disease Information for LOC100505921

No disorders were found for LOC100505921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100505921 Gene

Publications for LOC100505921 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 58

Products for LOC100505921 Gene

Sources for LOC100505921 Gene

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