Aliases for LOC100505918 Gene

Subcategory (RNA class) for LOC100505918 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100505918 Gene

  • Uncharacterized LOC100505918 3
  • NONHSAG003397.2 91
  • HSALNG0008288 164
  • Lnc-XCL2-2 165

External Ids for LOC100505918 Gene

Summaries for LOC100505918 Gene

GeneCards Summary for LOC100505918 Gene

LOC100505918 (Uncharacterized LOC100505918) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100505918 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100505918 Gene

Genomics for LOC100505918 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100505918 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J168421 Enhancer 0.8 Ensembl ENCODE 600.7 +1.2 1155 3.4 RFX1 PKNOX1 POLR2A REST IKZF2 DPF2 JUND NFE2 ZNF316 MAFG ENSG00000283255 LOC100505918 MIR557 ENSG00000228697 XCL2 TBX19
GH01J168400 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +23.6 23556 1.4 RFX1 LEF1 IKZF1 JUND MTA2 PRDM1 ZSCAN4 POLR2A DPF2 EP300 MIR557 ATP1B1 LOC101928596 TBX19 LOC100505918 XCL2
GH01J168407 Enhancer 0.8 ENCODE 0.4 +13.6 13618 3 CREB1 PRDM10 ZNF629 IKZF1 JUND IKZF2 TRIM22 ZNF341 ARID3A ZNF639 MIR557 NME7 TBX19 ATP1B1 LOC101928596 RCSD1 GPR161 LOC100505918 ENSG00000283255 ENSG00000228697
GH01J168397 Enhancer 1 Ensembl ENCODE 0.3 +25.4 25356 1.4 PRDM10 ZNF629 FOXA1 PRDM1 HDAC1 ZBTB44 ZNF639 SMARCC1 KLF7 ZXDB MIR557 TBX19 ATP1B1 LOC101928596 LOC100505918 XCL2
GH01J168391 Enhancer 0.9 Ensembl ENCODE 0.3 +30.0 30035 2 BACH1 RFX1 TSC22D4 NFE2 CEBPB ZNF316 MAFF RCOR1 MAFK GTF2F1 TBX19 MIR557 LOC100505918 XCL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505918 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100505918 Gene

Genomic Locations for LOC100505918 Gene
chr1:168,400,188-168,422,656
(GRCh38/hg38)
Size:
22,469 bases
Orientation:
Minus strand

Genomic View for LOC100505918 Gene

Genes around LOC100505918 on UCSC Golden Path with GeneCards custom track
LOC100505918 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100505918 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505918 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505918 Gene

Proteins for LOC100505918 Gene

Post-translational modifications for LOC100505918 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505918 Gene

Domains & Families for LOC100505918 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100505918 Gene

Function for LOC100505918 Gene

Phenotypes From GWAS Catalog for LOC100505918 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505918 Gene

Localization for LOC100505918 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505918 Gene

Pathways & Interactions for LOC100505918 Gene

PathCards logo

SuperPathways for LOC100505918 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100505918 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100505918 Gene

Drugs & Compounds for LOC100505918 Gene

No Compound Related Data Available

Transcripts for LOC100505918 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100505918 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075F02B_9606 lncRNA 2442 2

RefSeq: NR_037851,

LNCipedia: lnc-XCL2-2:7,

URS00008BBCD4_9606 lncRNA 2441 3

LncBook: HSALNT0017134,

LNCipedia: lnc-XCL2-2:3,

NONCODE: NONHSAT007437.2,

LOC100505918 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100505918 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505918 Gene

No ASD Table

Relevant External Links for LOC100505918 Gene

GeneLoc Exon Structure for
LOC100505918

Expression for LOC100505918 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100505918 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100505918

SOURCE GeneReport for Unigene cluster for LOC100505918 Gene:

Hs.568494
genes like me logo Genes that share expression patterns with LOC100505918: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505918 Gene

Orthologs for LOC100505918 Gene

No data available for Orthologs and Evolution for LOC100505918 Gene

Paralogs for LOC100505918 Gene

No data available for Paralogs for LOC100505918 Gene

Variants for LOC100505918 Gene

Additional dbSNP identifiers (rs#s) for LOC100505918 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100505918 Gene

Variant ID Type Subtype PubMed ID
esv2532981 CNV insertion 19546169
esv3417208 CNV duplication 20981092
esv998321 CNV insertion 20482838
nsv1002007 CNV gain 25217958
nsv1078878 OTHER inversion 25765185
nsv512748 CNV insertion 21212237

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100505918 Gene

Disorders for LOC100505918 Gene

No disorders were found for LOC100505918 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505918 Gene

Publications for LOC100505918 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100505918 Gene

Products for LOC100505918 Gene

Sources for LOC100505918 Gene