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Aliases for LOC100505915 Gene

Subcategory (RNA class) for LOC100505915 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100505915 Gene

  • Uncharacterized LOC100505915 3
  • AC139256.1 5

External Ids for LOC100505915 Gene

Previous GeneCards Identifiers for LOC100505915 Gene

  • GC16P015188
  • GC16U901603

Summaries for LOC100505915 Gene

GeneCards Summary for LOC100505915 Gene

LOC100505915 (Uncharacterized LOC100505915) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100505915 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100505915 Gene

Genomics for LOC100505915 Gene

GeneHancer (GH) Regulatory Elements for LOC100505915 Gene

Promoters and enhancers for LOC100505915 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I015092 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 576.5 -0.5 -473 2.1 CLOCK MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 POLR2B LOC100505915 RRN3 PARN NTAN1 PDXDC1
GH16I014095 Enhancer 1.1 Ensembl ENCODE 91.6 -997.5 -997504 3.8 CLOCK FOXA2 ZNF493 ZFP64 ZNF133 NEUROD1 FEZF1 ZNF213 FOS ZNF202 LOC100505915 PARN ENSG00000183458 RRN3 NPIPA3 NPIPA1 NPIPA2 ERCC4 BFAR PDXDC1
GH16I014283 Enhancer 1.3 Ensembl ENCODE 50.8 -809.0 -809007 3.7 MLX ZFP64 IRF4 YY1 SLC30A9 ZNF213 ZNF143 SP3 SSRP1 ZNF610 GC16P014288 TRT-CGT2-1 ENSG00000183458 NPIPA3 NPIPP1 NPIPA1 LOC100505915 NPIPA2 PARN PKD1P6
GH16I014337 Enhancer 1.3 Ensembl ENCODE dbSUPER 47.3 -756.5 -756547 1 FOXA2 MLX ZFP64 ARID4B YBX1 DMAP1 ZNF48 YY1 RXRA YY2 ENSG00000183458 PARN NPIPA2 LOC100505915 NPIPA3 NPIPA1 NPIPP1 ERCC4 ENSG00000261819 PKD1P6
GH16I014973 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 23.3 -119.1 -119090 2.8 PKNOX1 CLOCK ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PDXDC1 NPIPA2 ENSG00000183458 NPIPA3 NPIPA1 PARN LOC100505915 NPIPA5 ENSG00000261819 BFAR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100505915 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100505915 Gene

Genomic Locations for LOC100505915 Gene
chr16:15,094,411-15,109,197
(GRCh38/hg38)
Size:
14,787 bases
Orientation:
Plus strand

Genomic View for LOC100505915 Gene

Genes around LOC100505915 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505915 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505915 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505915 Gene

Proteins for LOC100505915 Gene

Post-translational modifications for LOC100505915 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505915 Gene

Domains & Families for LOC100505915 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100505915 Gene

Function for LOC100505915 Gene

Phenotypes From GWAS Catalog for LOC100505915 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505915 Gene

Localization for LOC100505915 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505915 Gene

Pathways & Interactions for LOC100505915 Gene

SuperPathways for LOC100505915 Gene

No Data Available

Interacting Proteins for LOC100505915 Gene

Gene Ontology (GO) - Biological Process for LOC100505915 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505915 Gene

Drugs & Compounds for LOC100505915 Gene

No Compound Related Data Available

Transcripts for LOC100505915 Gene

mRNA/cDNA for LOC100505915 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100505915 Gene

Uncharacterized LOC100505915:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505915 Gene

No ASD Table

Relevant External Links for LOC100505915 Gene

GeneLoc Exon Structure for
LOC100505915

Expression for LOC100505915 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505915 Gene

SOURCE GeneReport for Unigene cluster for LOC100505915 Gene:

Hs.678758
genes like me logo Genes that share expression patterns with LOC100505915: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505915 Gene

Orthologs for LOC100505915 Gene

Evolution for LOC100505915 Gene

ENSEMBL:
Gene Tree for LOC100505915 (if available)
TreeFam:
Gene Tree for LOC100505915 (if available)

No data available for Orthologs for LOC100505915 Gene

Paralogs for LOC100505915 Gene

No data available for Paralogs for LOC100505915 Gene

Variants for LOC100505915 Gene

Sequence variations from dbSNP and Humsavar for LOC100505915 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000038947 -- 15,107,822(+) A/C non_coding_transcript_variant
rs1000674666 -- 15,100,488(+) T/G intron_variant
rs1000924341 -- 15,105,079(+) G/A intron_variant
rs1001530849 -- 15,103,501(+) TATTTATTT/TATTT intron_variant
rs1001794160 -- 15,099,065(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505915 Gene

Variant ID Type Subtype PubMed ID
dgv2755n100 CNV gain 25217958
dgv2765n100 CNV gain 25217958
dgv2770n100 CNV loss 25217958
dgv4922n54 CNV loss 21841781
esv1168353 CNV deletion 17803354
esv2676791 CNV deletion 23128226
esv2714014 CNV deletion 23290073
esv2758632 CNV gain+loss 17122850
esv2762254 CNV gain+loss 21179565
esv3570354 CNV gain 25503493
esv3892797 CNV gain 25118596
nsv1036298 CNV gain 25217958
nsv1038955 CNV loss 25217958
nsv1042130 CNV gain 25217958
nsv1050325 CNV loss 25217958
nsv1053467 CNV loss 25217958
nsv511045 OTHER complex 20534489
nsv7277 OTHER inversion 18451855
nsv977910 CNV duplication 23825009
nsv984375 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100505915 Gene

Disorders for LOC100505915 Gene

Additional Disease Information for LOC100505915

No disorders were found for LOC100505915 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100505915 Gene

Publications for LOC100505915 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100505915 Gene

Sources for LOC100505915 Gene

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