Aliases for LOC100505716 Gene

Subcategory (RNA class) for LOC100505716 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC100505716 Gene

  • Uncharacterized LOC100505716 3

External Ids for LOC100505716 Gene

Previous GeneCards Identifiers for LOC100505716 Gene

  • GC02M028531

Summaries for LOC100505716 Gene

GeneCards Summary for LOC100505716 Gene

LOC100505716 (Uncharacterized LOC100505716) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100505716 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100505716 Gene

Genomics for LOC100505716 Gene

GeneHancer (GH) Regulatory Elements for LOC100505716 Gene

Promoters and enhancers for LOC100505716 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J028311 Enhancer 0.3 VISTA Ensembl 750.6 -1.9 -1861 1.8 ENSG00000223522 LOC100505716 SNX17 piR-48820-050 BABAM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505716 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100505716 Gene

Genomic Locations for LOC100505716 Gene
chr2:28,307,691-28,310,459
(GRCh38/hg38)
Size:
2,769 bases
Orientation:
Minus strand

Genomic View for LOC100505716 Gene

Genes around LOC100505716 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505716 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505716 Gene

Proteins for LOC100505716 Gene

Post-translational modifications for LOC100505716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505716 Gene

Domains & Families for LOC100505716 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100505716 Gene

Function for LOC100505716 Gene

Phenotypes From GWAS Catalog for LOC100505716 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505716 Gene

Localization for LOC100505716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505716 Gene

Pathways & Interactions for LOC100505716 Gene

PathCards logo

SuperPathways for LOC100505716 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100505716 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505716 Gene

Drugs & Compounds for LOC100505716 Gene

No Compound Related Data Available

Transcripts for LOC100505716 Gene

mRNA/cDNA for LOC100505716 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505716 Gene

No ASD Table

Relevant External Links for LOC100505716 Gene

GeneLoc Exon Structure for
LOC100505716

Expression for LOC100505716 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505716 Gene

SOURCE GeneReport for Unigene cluster for LOC100505716 Gene:

Hs.679092
genes like me logo Genes that share expression patterns with LOC100505716: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505716 Gene

Orthologs for LOC100505716 Gene

No data available for Orthologs and Evolution for LOC100505716 Gene

Paralogs for LOC100505716 Gene

No data available for Paralogs for LOC100505716 Gene

Variants for LOC100505716 Gene

Sequence variations from dbSNP and Humsavar for LOC100505716 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000070235 -- 28,308,074(-) G/A non_coding_transcript_variant
rs1000205772 -- 28,308,127(-) G/C non_coding_transcript_variant
rs1000692252 -- 28,309,574(-) C/A non_coding_transcript_variant
rs1001188900 -- 28,308,482(-) A/G non_coding_transcript_variant
rs1001571686 -- 28,311,624(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505716 Gene

Variant ID Type Subtype PubMed ID
nsv963217 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100505716 Gene

Disorders for LOC100505716 Gene

No disorders were found for LOC100505716 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505716 Gene

Publications for LOC100505716 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC100505716 Gene

Products for LOC100505716 Gene

Sources for LOC100505716 Gene